Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi657g00001 ATGGATTCTGGCTATGATATTTCGAGGGTACTGTTCAATACCACTTCTTATAGACTTGATGCTTTCAATGGGATTTCAAGAGGTGGGTTTGCATCAACAAATTCTTTGGTTTTGGATAGTGAGAAAGAAGAAGTAGTGAAGTCCCCTCCAAATCAAATGAATGGAGAGAAAAAGATTTGTGATGCTAACAAAAGTTTGGTGGCTTTGAAGAGTCATAGGGAAGCTGAGAGGAGAAGAAGAAACAGAATCAATGGTCATCTTGCAAAACTTCGAGGACTTGTCTCATGTTCTACAAAGATGGACAAAGCAACCTTACTAGCAGAGGTTATAAGGCAAGTGAAGGAACTGAAAAAGAATGCAGATCAAGAAAGCAAAGGTTACCTAATCCCAAAAGATAGCAATGAAGTGAAAGTTGAAATTGAGCCATGTGAAAGAGGAGGAGTAGATGGCTCAATTCTTTACAAAGCATCAATCTGCTGTGATTATGGACCAGAGCTTCTATCTGATCTAAAGCAAACTCTTGATACACTTCAACTGGATTTGGTAAGGGCAGAATTGTCAACTTTGGGAGACAGGGTTAAGAATGAATTTGTTTACACATGTTGTAAAGTGGATATTTATGATGTTGGGTTATGTCAAGTTATTGCAAGTAATGTTCATCATGCACTTAGTTCTGTTTTGGAGAAGGCTTCTGCTTCAATGGATTATGAAATAAGACTACCACCGCGTCCTTGCCTTCGGCTGCAAAATGTGACATCTACTTTGTCATGCAACCATGAATTTTGTTCATGTTGA 795 0.3849 MDSGYDISRVLFNTTSYRLDAFNGISRGGFASTNSLVLDSEKEEVVKSPPNQMNGEKKICDANKSLVALKSHREAERRRRNRINGHLAKLRGLVSCSTKMDKATLLAEVIRQVKELKKNADQESKGYLIPKDSNEVKVEIEPCERGGVDGSILYKASICCDYGPELLSDLKQTLDTLQLDLVRAELSTLGDRVKNEFVYTCCKVDIYDVGLCQVIASNVHHALSSVLEKASASMDYEIRLPPRPCLRLQNVTSTLSCNHEFCSC 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi657g00001 264 Gene3D - 63 126 IPR036638 GO:0046983
Vivi657g00001 264 Coils Coil 106 126 - -
Vivi657g00001 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 122 IPR036638 GO:0046983
Vivi657g00001 264 SMART finulus 73 122 IPR011598 GO:0046983
Vivi657g00001 264 Coils Coil 167 187 - -
Vivi657g00001 264 CDD ACT_UUR-ACR-like 157 198 - -
Vivi657g00001 264 Pfam Helix-loop-helix DNA-binding domain 71 116 IPR011598 GO:0046983
Vivi657g00001 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 116 IPR011598 GO:0046983
Vivi657g00001 264 PANTHER TRANSCRIPTION FACTOR BHLH30 30 233 IPR045847 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi657g00001 57 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 44.828 1.02e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi657g00001 HLH 5.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi657g00001 - - vvo:131595173 348.206