Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi656g00004 ATGTTGGCTTCCGACATGGGGCTAAAACAAAACCAACAACCTTCTGAATTCTTTTGCAAAACTCTAACAGCTAGTGACACTAGCACTCATGGTGGTTTTTCCGTGCCTCGTCGAGCCGCCGAGAAAATATTCCCACCTCTGGACTTTTCAATGCAACCACCAGCTCAGGAAATAGTGGCCAAAGATTTGCACGACACTACATGGACATTTAGACATATTTATCGCGGACAACCAAAGAGGCATCTATTGACTACCGGTTGGAGTGTCTTTGTTAGCACGAAAAGACTCTTTGCCGGAGATTCTGTTCTTTTTATTAGAGATGAAAAGCAGCAACTCCTTTTAGGTATAAAGAGGTCCAGTAGACAGCAACCAGCACTATCTTCATCGGTTATATCGAGTGACAGCATGCATATCGGCATTCTTGCTGCTGCGGCTCATGCTGCTTCAAATAACAGCCCATTTACTATATTTTATAATCCAAGGACCAGCCCGTGCGAATTTGTGATTCCATTGGCCAAGTATAATAAAGCCTTGTACACTCATGTTTCCCTTGGAATGAGATTCAGAATGATGTTTGAGACCGAGGACTCGGGAGTACGTAGATATATGGGTACAATCACTGGGATTAGTGACTTGGATCCTGTTCGATGGAAAAATTCACAATGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGAGAGCGTCCAAGCCGAGTTTCAATTTGGGATATTGAACCAGTTGTGACTCCTTTCTACATTTGCCCACCTCCGTTTTTTCGGCCAAAGTTTCCCAAACAACCAGGAATGCCAGAAGACGAGTCTGAAATCGAAAATGCTTTCAAGAGAGCTATGCCTTGGCTCGGAGATGAACTCGGCATGAAGGATGCCTCAAGTTCAATCTTCCCTGGTTTGAGTTTAGTACAATGGATGAGCATGCAGCAGAATAATAATAACAATAATCAGTTTTCTTCTCCTCAGTCAGCGCTTTTACCTCCATCCATGCTCTCATCAAACACACTTCACGGTAACGGTAGCCTTAACACCGATGATCCGTCCAAGATATTGAACTTTCAGTCCCCGGCTGCGCTCTCTGCTCCAAGTCTTCATTTTAACAAACCTAATTTACCAAACCAACAGCCCCCGACCTCGTGGGCCCAGCAGCAGCAACAGCAGCAGAAGATGCAATCATTGTTGCAAACGCCGTTAAACCAGCTGCAGCAACAACAGCAGCAGCAGCAGCAGAGGCAGCTGCAGCTGGCCGGAGTGCAAAATTTGCCGCAATCACAGCAACAACAGCCTCAACTAAATCAACATAATGCACAGCCGCCTCAACAACAACCGCAACAACAACACCAACAGCCGTGTCAAAACACGACTATGAATAATGGCACAGTTGGTTCTAACCAGATTTCAAATCAATGTGTGCAGCAACAAGTAAACTACTCTCAGCTTCAGCAACAGTTACTCTCAGGAAGTATCCCAACGCAACAAAATTTCCAGTCCGTTGGCAAGAATGGGTCGATAATGACATCCTTACCACAAGACTCGCAATTTCAGCAACAGCAACAGATAGACCCGCAACAAGCTAGTCTCTTACAGCGGCAGCAGCAGCAAACTCAATTGCAACAATCTTCATTACAGTTATTGCAACAAAGCATGTTACAAAGGGCACCACAACAATCGCAAGCATCTCAAATTTTGCCGCAAAACATCTCAGACCAACAATCACAGATGCAGCTACTACAGAAGTTGCAACAGCAACAGCAGCAACAACAGCAGCAGCAACTGCTTTCCACGTCTTCCCCGCTTTTGCAGTCTCAGCTTCTACAGCAACAGAATACTCACCAGCAATTGTCGCAGCTGCCGATGTCTCAACATCAGCCTCAACAGCTTGGCAACAATGCGTTTTCAATGGAGAAGCTTCTCAACAACAATTACTCTTCTTCACCTCTAATGCAATCGCAGCAGCTTCCCACAAACCATCCTCAGAATACTCATAAGTCACCGACGAATACCAGACCTCCCTCCGCTTTTACAGATGGAGACGCCCCATCATGCTCCACTTCACCGTCTACTAATAACTGTCAGACGTCGCCTCCGAATCCCCTGAAAAGAAATCAACCAGACACATTTGGAGGGCCTTCGTTAGTCGAAACCACCAATAGTATGATGCACGAGCTTCAAAGTAAGCTCGACATGCAGAATAAACACGACTTACACGGTGTAAAAGGACCTGACAAGCAAAAGCACAAAGGAGCAATCAATGATCAGATGGAATCTTCTTCTGGAACATCGTACAATATTGATCCCGTTAACATCCACCAGAACTTTCCACTTTCCAACTTCTACATGGATGGTGGTGATGTCCACTCACAACAACCTAGAAGTAATTTACCATTTGCCCCCAACCTTGATGGATTAACACCCGATCCTTTGCTCTCAAGAGGTTATGATTCTCAAAAAGATCTTCAAAACTTGTTGTCTAATTACGGTGGTGCTCCACGAGACATTGAAACCGAGCTGTCAACTGCTGATATAAGTTCACAATCGTTTGGGGTGCCGAACATGTCCTTTAAGCCCGGATGCTCAAATGATATTGCCATCACTGATACCGCGGTTTTGAACAATGGCTTATGGTCTAATCAGACTCAGCGAATGCGAACATACACCAAGGTTCAAAAATGTGGCTCGGTCGGAAGATGTATTGATGTCACCCGATACAAGGGATACGAAGAACTCCGAAATGATTTGGCTCGTATGTTCGGGATTGAAGGTCAGCTAGAAGATCCACTAAGAACGGACTGGAAACTTGTATACGTGGATCACGAAAACGACATTCTTCTTGTAGGCGACGACCCTTGGGAAGAATTTGTAAACTGTGTCCAAAGCATAAAGATACTATCATCTGTTGAAGTACAACAAATGAGCTTGGAAGGGGACTTAGGTTATGTTCCAATCACCAATCAAGCTTGTAGTGGTTCAGAAAGTGGCAATGCATGGAGAGCTCAGTATGATGATAACTCGGCAGCGTCGTTCAATCGATGA 3051 0.45 MLASDMGLKQNQQPSEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRSSRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRTSPCEFVIPLAKYNKALYTHVSLGMRFRMMFETEDSGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPEDESEIENAFKRAMPWLGDELGMKDASSSIFPGLSLVQWMSMQQNNNNNNQFSSPQSALLPPSMLSSNTLHGNGSLNTDDPSKILNFQSPAALSAPSLHFNKPNLPNQQPPTSWAQQQQQQQKMQSLLQTPLNQLQQQQQQQQQRQLQLAGVQNLPQSQQQQPQLNQHNAQPPQQQPQQQHQQPCQNTTMNNGTVGSNQISNQCVQQQVNYSQLQQQLLSGSIPTQQNFQSVGKNGSIMTSLPQDSQFQQQQQIDPQQASLLQRQQQQTQLQQSSLQLLQQSMLQRAPQQSQASQILPQNISDQQSQMQLLQKLQQQQQQQQQQQLLSTSSPLLQSQLLQQQNTHQQLSQLPMSQHQPQQLGNNAFSMEKLLNNNYSSSPLMQSQQLPTNHPQNTHKSPTNTRPPSAFTDGDAPSCSTSPSTNNCQTSPPNPLKRNQPDTFGGPSLVETTNSMMHELQSKLDMQNKHDLHGVKGPDKQKHKGAINDQMESSSGTSYNIDPVNIHQNFPLSNFYMDGGDVHSQQPRSNLPFAPNLDGLTPDPLLSRGYDSQKDLQNLLSNYGGAPRDIETELSTADISSQSFGVPNMSFKPGCSNDIAITDTAVLNNGLWSNQTQRMRTYTKVQKCGSVGRCIDVTRYKGYEELRNDLARMFGIEGQLEDPLRTDWKLVYVDHENDILLVGDDPWEEFVNCVQSIKILSSVEVQQMSLEGDLGYVPITNQACSGSESGNAWRAQYDDNSAASFNR 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi656g00004 1016 Gene3D - 16 119 IPR015300 -
Vivi656g00004 1016 SUPERFAMILY DNA-binding pseudobarrel domain 8 147 IPR015300 -
Vivi656g00004 1016 FunFam Auxin response factor 884 978 - -
Vivi656g00004 1016 SUPERFAMILY CAD & PB1 domains 902 967 - -
Vivi656g00004 1016 Coils Coil 573 596 - -
Vivi656g00004 1016 MobiDBLite consensus disorder prediction 739 756 - -
Vivi656g00004 1016 ProSiteProfiles B3 DNA-binding domain profile. 18 120 IPR003340 GO:0003677
Vivi656g00004 1016 MobiDBLite consensus disorder prediction 648 719 - -
Vivi656g00004 1016 MobiDBLite consensus disorder prediction 739 768 - -
Vivi656g00004 1016 MobiDBLite consensus disorder prediction 648 707 - -
Vivi656g00004 1016 FunFam Auxin response factor 16 120 - -
Vivi656g00004 1016 Pfam Auxin response factor 144 226 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi656g00004 1016 ProSiteProfiles PB1 domain profile. 889 973 IPR000270 GO:0005515
Vivi656g00004 1016 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 3 978 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi656g00004 1016 MobiDBLite consensus disorder prediction 502 533 - -
Vivi656g00004 1016 Gene3D - 884 978 - -
Vivi656g00004 1016 Pfam B3 DNA binding domain 18 119 IPR003340 GO:0003677
Vivi656g00004 1016 SMART B3_2 18 120 IPR003340 GO:0003677
Vivi656g00004 1016 CDD B3_DNA 17 109 IPR003340 GO:0003677
Vivi656g00004 1016 FunFam Auxin response factor 181 253 - -
Vivi656g00004 1016 MobiDBLite consensus disorder prediction 421 466 - -
Vivi656g00004 1016 Gene3D - 181 252 - -
Vivi656g00004 1016 MobiDBLite consensus disorder prediction 318 398 - -
Vivi656g00004 1016 Pfam AUX/IAA family 886 975 IPR033389 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi656g00004 1 396 B3 DNA Binding Superfamily AT1G19220 78.535 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi656g00004 AUX_IAA 8.4e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi656g00004 K14486 - gmx:100815277 1350.88