Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi656g00003 ATGAAGGCTCCTTCTAATGGTTACTTGCCTAATTCTGGTGAAGGAGGGGAAAGGAAGACCATCAATTCAGAGTTATGGCATGCTTGTGCCGGGCCATTGGTTTCTATACCTCCTGTTGGAAGTCTTGTTGTTTACTTTCCTCAAGGACACAGCGAGCAAGTTGCAGCATCCATGCAAAAAGAGGCAGATTTCATACCAAGTTACCCTAATCTCCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCGCTTCATGCTGACCCTGAAACCGATGAGGTCTACGCTCAAATGACCCTTCAACCTGTAAATAAATATGACAAGGAAGCAATGTTGGCTTCCGACATGGGGCTAAAACAAAACCAACAACCTTCTGAATTCTTTTGCAAAACTCTAACAGCTAGTGACACTAGCACTCATGGTGGTTTTTCCGTGCCTCGTCGAGCCGCCGAGAAAATATTCCCACCTCTGGACTTTTCAATGCAACCACCAGCTCAGGAAATAGTGGCCAAAGATTTGCACGACACTACATGGACATTTAGACATATTTATCGCGGACAACCAAAGAGGCATCTATTGACTACCGGTTGGAGTGTCTTTGTTAGCACGAAAAGACTCTTTGCCGGAGATTCTGTTCTTTTTATTAGAGATGAAAAGCAGCAACTCCTTTTAGGTATAAAGAGGTCCAGTAGACAGCAACCAGCACTATCTTCATCGGTTATATCGAGTGACAGCATGCATATCGGCATTCTTGCTGCTGCGGCTCATGCTGCTTCAAATAACAGCCCATTTACTATATTTTATAATCCAAGGACCAGCCCGTGCGAATTTGTGATTCCATTGGCCAAGTATAATAAAGCCTTGTACACTCATGTTTCCCTTGGAATGAGATTCAGAATGATGTTTGAGACCGAGGACTCGGGAGTACGTAGATATATGGGTACAATCACTGGGATTAGTGACTTGGATCCTGTTCGATGGAAAAATTCACAATGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGAGAGCGTCCAAGCCGAGTTTCAATTTGGGATATTGAACCAGTTGTGACTCCTTTCTACATTTGCCCACCTCCGTTTTTTCGGCCAAAGTTTCCCAAACAACCAGGAATGCCAGAAGACGAGTCTGAAATCGAAAATGCTTTCAAGAGAGCTATGCCTTGGCTCGGAGATGAACTCGGCATGAAGGATGCCTCAAGTTCAATCTTCCCTGGTTTGAGTTTAGTACAATGGATGAGCATGCAGCAGAATAATAATAACAATAATCAGTTTTCTTCTCCTCAGTCAGCGCTTTTACCTCCATCCATGCTCTCATCAAACACACTTCACGGTAACGGTAGCCTTAACACCGATGATCCGTCCAAGATATTGAACTTTCAGTCCCCGGCTGCGCTCTCTGCTCCAAGTCTTCATTTTAACAAACCTAATTTACCAAACCAACAGCCCCCGACCTCGTGGGCCCAGCAGCAGCAACAGCAGCAGAAGATGCAATCATTGTTGCAAACGCCGTTAAACCAGCTGCAGCAACAACAGCAGCAGCAGCAGCAGAGGCAGCTGCAGCTGGCCGGAGTGCAAAATTTGCCGCAATCACAGCAACAACAGCCTCAACTAAATCAACATAATGCACAGCCGCCTCAACAACAACCGCAACAACAACACCAACAGCCGTGTCAAAACACGACTATGAATAATGGCACAGTTGGTTCTAACCAGATTTCAAATCAATGTGTGCAGCAACAAGTAAACTACTCTCAGCTTCAGCAACAGTTACTCTCAGGAAGTATCCCAACGCAACAAAATTTCCAGTCCGTTGGCAAGAATGGGTCGATAATGACATCCTTACCACAAGACTCGCAATTTCAGCAACAGCAACAGATAGACCCGCAACAAGCTAGTCTCTTACAGCGGCAGCAGCAGCAAACTCAATTGCAACAATCTTCATTACAGTTATTGCAACAAAGCATGTTACAAAGGGCACCACAACAATCGCAAGCATCTCAAATTTTGCCGCAAAACATCTCAGACCAACAATCACAGATGCAGCTACTACAGAAGTTGCAACAGCAACAGCAGCAACAACAGCAGCAGCAACTGCTTTCCACGTCTTCCCCGCTTTTGCAGTCTCAGCTTCTACAGCAACAGAATACTCACCAGCAATTGTCGCAGCTGCCGATGTCTCAACATCAGCCTCAACAGCTTGGCAACAATGCGTTTTCAATGGAGAAGCTTCTCAACAACAATTACTCTTCTTCACCTCTAATGCAATCGCAGCAGCTTCCCACAAACCATCCTCAGAATACTCATAAGTCACCGACGAATACCAGACCTCCCTCCGCTTTTACAGATGGAGACGCCCCATCATGCTCCACTTCACCGTCTACTAATAACTGTCAGACGTCGCCTCCGAATCCCCTGAAAAGAAATCAACCAGACACATTTGGAGGGCCTTCGTTAGTCGAAACCACCAATAGTATGATGCACGAGCTTCAAAGTAAGCTCGACATGCAGAATAAACACGACTTACACGGTGTAAAAGGACCTGACAAGCAAAAGCACAAAGGAGCAATCAATGATCAGATGGAATCTTCTTCTGGAACATCGTACAATATTGATCCCGTTAACATCCACCAGAACTTTCCACTTTCCAACTTCTACATGGATGGTGGTGATGTCCACTCACAACAACCTAGAAGTAATTTACCATTTGCCCCCAACCTTGATGGATTAACACCCGATCCTTTGCTCTCAAGAGGTTATGATTCTCAAAAAGATCTTCAAAACTTGTTGTCTAATTACGGTGGTGCTCCACGAGACATTGAAACCGAGCTGTCAACTGCTGATATAAGTTCACAATCGTTTGGGGTGCCGAACATGTCCTTTAAGCCCGGATGCTCAAATGATATTGCCATCACTGATACCGCGGTTTTGAACAATGGCTTATGGTCTAATCAGACTCAGCGAATGCGAACATACACCAAGGTTCAAAAATGTGGCTCGGTCGGAAGATGTATTGATGTCACCCGATACAAGGGATACGAAGAACTCCGAAATGATTTGGCTCGTATGTTCGGGATTGAAGGTCAGCTAGAAGATCCACTAAGAACGGACTGGAAACTTGTATACGTGGATCACGAAAACGACATTCTTCTTGTAGGCGACGACCCTTGGGAAGAATTTGTAAACTGTGTCCAAAGCATAAAGATACTATCATCTGTTGAAGTACAACAAATGAGCTTGGAAGGGGACTTAGGTTATGTTCCAATCACCAATCAAGCTTGTAGTGGTTCAGAAAGTGGCAATGCATGGAGAGCTCAGTATGATGATAACTCGGCAGCGTCGTTCAATCGATGA 3378 0.4497 MKAPSNGYLPNSGEGGERKTINSELWHACAGPLVSIPPVGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAMLASDMGLKQNQQPSEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRSSRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRTSPCEFVIPLAKYNKALYTHVSLGMRFRMMFETEDSGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPEDESEIENAFKRAMPWLGDELGMKDASSSIFPGLSLVQWMSMQQNNNNNNQFSSPQSALLPPSMLSSNTLHGNGSLNTDDPSKILNFQSPAALSAPSLHFNKPNLPNQQPPTSWAQQQQQQQKMQSLLQTPLNQLQQQQQQQQQRQLQLAGVQNLPQSQQQQPQLNQHNAQPPQQQPQQQHQQPCQNTTMNNGTVGSNQISNQCVQQQVNYSQLQQQLLSGSIPTQQNFQSVGKNGSIMTSLPQDSQFQQQQQIDPQQASLLQRQQQQTQLQQSSLQLLQQSMLQRAPQQSQASQILPQNISDQQSQMQLLQKLQQQQQQQQQQQLLSTSSPLLQSQLLQQQNTHQQLSQLPMSQHQPQQLGNNAFSMEKLLNNNYSSSPLMQSQQLPTNHPQNTHKSPTNTRPPSAFTDGDAPSCSTSPSTNNCQTSPPNPLKRNQPDTFGGPSLVETTNSMMHELQSKLDMQNKHDLHGVKGPDKQKHKGAINDQMESSSGTSYNIDPVNIHQNFPLSNFYMDGGDVHSQQPRSNLPFAPNLDGLTPDPLLSRGYDSQKDLQNLLSNYGGAPRDIETELSTADISSQSFGVPNMSFKPGCSNDIAITDTAVLNNGLWSNQTQRMRTYTKVQKCGSVGRCIDVTRYKGYEELRNDLARMFGIEGQLEDPLRTDWKLVYVDHENDILLVGDDPWEEFVNCVQSIKILSSVEVQQMSLEGDLGYVPITNQACSGSESGNAWRAQYDDNSAASFNR 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi656g00003 1125 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Vivi656g00003 1125 Gene3D - 290 361 - -
Vivi656g00003 1125 MobiDBLite consensus disorder prediction 427 507 - -
Vivi656g00003 1125 FunFam Auxin response factor 993 1087 - -
Vivi656g00003 1125 Gene3D - 125 228 IPR015300 -
Vivi656g00003 1125 MobiDBLite consensus disorder prediction 611 642 - -
Vivi656g00003 1125 CDD B3_DNA 126 218 IPR003340 GO:0003677
Vivi656g00003 1125 Coils Coil 682 705 - -
Vivi656g00003 1125 MobiDBLite consensus disorder prediction 530 575 - -
Vivi656g00003 1125 ProSiteProfiles PB1 domain profile. 998 1082 IPR000270 GO:0005515
Vivi656g00003 1125 Pfam AUX/IAA family 995 1084 IPR033389 -
Vivi656g00003 1125 FunFam Auxin response factor 125 229 - -
Vivi656g00003 1125 Gene3D - 993 1087 - -
Vivi656g00003 1125 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Vivi656g00003 1125 SMART B3_2 127 229 IPR003340 GO:0003677
Vivi656g00003 1125 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 1087 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi656g00003 1125 MobiDBLite consensus disorder prediction 757 828 - -
Vivi656g00003 1125 FunFam Auxin response factor 290 362 - -
Vivi656g00003 1125 SUPERFAMILY CAD & PB1 domains 1011 1076 - -
Vivi656g00003 1125 MobiDBLite consensus disorder prediction 848 865 - -
Vivi656g00003 1125 MobiDBLite consensus disorder prediction 757 816 - -
Vivi656g00003 1125 Pfam Auxin response factor 253 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi656g00003 1125 MobiDBLite consensus disorder prediction 848 877 - -
Vivi656g00003 1125 SUPERFAMILY DNA-binding pseudobarrel domain 117 256 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi656g00003 1 505 B3 DNA Binding Superfamily AT1G19220 80.000 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi656g00003 AUX_IAA 9.6e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi656g00003 K14486 - gmx:100815277 1563.51