Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi653g00011 ATGGTATGCAGGGCTTGTGGGAAGAACGCTGATCATTGGAGTGAAAGCTGTCCATATATATCTGTTGAAAGGTTTGTTGATATACCTCCAAGGCTAGTAGATGAGCCGTATCTGAGTTGGAGGAACTATAAGAATTCTCTTCGGGTAACCAACCTCTCGGAGGACACAAGCGAGGGTGATTTGTTTGAGCTTTTCAGTTATTTTGGTACAGTGGTCAGGGTCTATGTTGACATAGATCAAGAGACTGGCATTTGTAGAGGCTTTGGCTTTGTTAACTTTGTCAGCAGGGAAGATTCTCAAAGGGCTATTAACAAACTCAACGGATATGGCTACGATAGTCTCATTCTGAGAGTTGAATGGGCCACCCCTACCTAG 375 0.44 MVCRACGKNADHWSESCPYISVERFVDIPPRLVDEPYLSWRNYKNSLRVTNLSEDTSEGDLFELFSYFGTVVRVYVDIDQETGICRGFGFVNFVSREDSQRAINKLNGYGYDSLILRVEWATPT 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi653g00011 124 Gene3D - 40 124 IPR012677 -
Vivi653g00011 124 SUPERFAMILY RNA-binding domain, RBD 37 123 IPR035979 GO:0003676
Vivi653g00011 124 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 123 IPR000504 GO:0003723
Vivi653g00011 124 SMART rrm1_1 46 119 IPR000504 GO:0003723
Vivi653g00011 124 CDD RRM_eIF3G_like 46 121 IPR034240 -
Vivi653g00011 124 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 43 122 - -
Vivi653g00011 124 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 112 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi653g00011 1 123 Eukaryotic Initiation Factors Gene Family AT3G11400 54.194 3.58e-50 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi653g00011 K03248 - vvo:131634662 262.692