Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi650g00004 ATGTTGTTTAAGTTTCATCTCAGACTCATTTTTTGCAGGGAACGAAAACGCGCCGTCGCCATGGGGAGAAGACCTGCAAGATGTTACCGTCAGATTAAGAACAAGCCGTACCCCAAATCTCGTTTCTGCCGGGGTGTTCCTGATCCCAAGATCAGAATTTACGATGTCGGCATGAAGAAGAAGGGTGTGGATGAGTTTCCTTTCTGTGTCCATCTTGTCAGCTGGGAGAAAGAGAATGTGTCAAGTGAGGCACTCGAGGCGGCTCGTATTGCTTGCAACAAGTACATGACTAAGTTTGCTGGAAAGGATGCTTTCCACTTGAGGGTTAGGGTTCACCCTTTCCATGTTCTCAGGATTAACAAGATGCTTTCCTGTGCTGGAGCTGATAGGCTTCAGACTGGTATGCGTGGTGCTTTTGGAAAGCCACAGGGTGTCTGTGCTAGGGTTGCTATTGGACAGGTGCTTCTCTCGGTCCGTTGCAAGGACAGCAATGGACAGAATGCTCAGGAGGCTCTTCGTAGGGCTAAGTTTAAGTTCCCTGGCCGTCAAAAGATCATTGTCAGTAGGAAGTGGGGATTTACCAAGATTGATCGCAATGATTATTTGAAGTTGAAATCAGAGAACAGGATTCTGAATGATGGTGTTAATGCTAAGCTTCTTGGATGCCATGGACCACTGGCTAACCGTCAACCTGGAAGAGCTTTTATCAATGCTAGCTGCAATGCTTAG 729 0.4705 MLFKFHLRLIFCRERKRAVAMGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDSNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKIDRNDYLKLKSENRILNDGVNAKLLGCHGPLANRQPGRAFINASCNA 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi650g00004 242 CDD Ribosomal_L16_L10e 61 186 IPR016180 GO:0003735|GO:0005840|GO:0006412
Vivi650g00004 242 NCBIfam 50S ribosomal protein L16 21 194 IPR001197 GO:0003735|GO:0005840|GO:0006412
Vivi650g00004 242 SUPERFAMILY Ribosomal protein L16p/L10e 24 193 IPR036920 GO:0003735|GO:0005840|GO:0006412
Vivi650g00004 242 ProSitePatterns Ribosomal protein L10e signature. 128 149 IPR018255 GO:0003735|GO:0005840|GO:0006412
Vivi650g00004 242 Gene3D Ribosomal protein L10e/L16 21 238 IPR036920 GO:0003735|GO:0005840|GO:0006412
Vivi650g00004 242 PANTHER 60S RIBOSOMAL PROTEIN L10 21 233 IPR001197 GO:0003735|GO:0005840|GO:0006412
Vivi650g00004 242 FunFam 60S ribosomal protein L10 21 226 - -
Vivi650g00004 242 Pfam Ribosomal protein L16p/L10e 32 186 IPR016180 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi650g00004 21 239 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 86.301 7.18e-142 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi650g00004 K02866 - csin:114279382 431.024