Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi64g00017 ATGAGCAAGGTCCTGGGGAGTATTATCAGTAGAAATCAAGCTGCCTTTGTGCCAGGACAGAAAATTCATGACCACATTCTGTTAGCATATGAACTCATTAGAGGATACTCGAGGAAAGGTGGCATGCCAAGAGTAATGGTTCAAATGGATATTAGGAAGGCTTATGATTCAGTTGACTGGAAGGCTATGCAATGTATTTTGGCTGAAGTGGGGTTTCCTAGGAAATTCATAAGCTGGATTATGTTGGGTGTAACCACTGTATCTTACCAATTCAACATCAATGGCAGTATCTCTAAGCACATGAAAGCTGCAAGGGGTCTAAGGCAAGGTGACCCTATGTCACCCTTGCTGTCTGTGGTGATAATGGAGTATTTGCATAGGAAACTGGACTGTCTAAGCACTGAACCTGAATTCAAATTCCACATAAACTGTGAGAAGCTGAATCTTGTGGATCTGAGTTTTGCAGATGACCTGCTACTCTTCTCCAAAGGAGACAGTGGTTCTGTTAGTATGATGATGAAAAAGTTTGAGGAGTTTTCCATGTCCACTGGGATGCAAGTCAATCCAAACAAATGTCAAATCTACTGTGGTGGCATGGAAGAGAGTGGTATCACCAGGATTGAAGGGATTACAGGGTTCAAGAGAGGTTCCTTACCCTTCAAGTATCTAGGTATTCCACTTACTAGCAGGAAGTTATCTAATAATCAATGTATGGCTTTGGCTGATAGAATTGGTGGCAAGATGACACATTGGAGCTCCCATTTACTTAGCTATGCTGGCCGTGTGCAGATGGTCAACACTGTTCTGTTTGGATGCGTGAACTATTGGATGTGCTGTCTACCTTTGCCTAAAGGGGTCATTAGAAGAATTGAAGCAATGTGCAGGTCCTTTGTGTGGTCGGGGACTGATAAGGTGACTAGGAAAGCTCCGGTGGCTTGGGACAAAGTGTGTACACCTAAAAAATATGGGGGCTTGGGCATTAAAAATCTGCAGGTGTGGAATAAAGATGATGTTATGCAGGTGGAGATTAAGGAGAATGGCTCATGGATAATTAAGAGTATTCTGAACATGAGAGAAGAGGTCACAGGTATGCAACAATGGATACACTTGAATCATGGGGCCAAGTTCCAAACTAAGGGCATGTATATGGAACATATGAAGCGTAATACTCTGGTGGAATGGCGTGACTTGGTTTGCAAGAATAAAGCGAGTCCTAGAGAAGTTTTCGTCTTTTGGTTGGCGTGTCAAGATAGGCTTGCGACTAAAGACCGTTTAGCAAAGTTTGGCATTAATGTGGATCAGCAGTGTATGTTCTGTGACTGTATAGAAACTGTGAATCACCTTTTCTTCGAATTCAGGTATTCAAAAAAGGTGTGGGGAGAGATCCTTGGATGGCTGTGCATTCAGCATAACATTCAAGACTGGAACCATGAAAGGCACTGGCTCATAAAAATCAGCAAGAGTAAAAACTGGAGGAAGCACTTTGTGAAGGCTGTTGTGGCTGAAACAGTTTACGCTGTTTGGTTAGATAGGAATGCTAGAGTGTTTAGAAATGAGATCGATGATAAACACATTGTGAATAGAATTATAGAAAGAATTACAAATAGAATTTGGAATTACCCTAAGTATAGAGAAAGTTGTCAGACCAATGATATGGATTCTTCAAGGGGAGTCCTCTCAATAACTATGGAAAAATTCAAAATGTGCACAAGTGGTTCAAACCAATCAAATTGGAAGAAGTTGGATGCACGTGAAATCCAACCAAGCTTTAGACCAGAAGTAGCTGGGAAGTACCGTGTTGCAAACTTTGAGAAGCGTTGGACTGATATGCCTGTTGTTGATTCACTGGCTGCAAGCCCAAATGGTGGAAATCCCTTCAAGGACTTCTCTTATGTCAGGCATGCAGTCTCTTTTCTTCAACAGAATAGCCCTGCTTGCTAA 1941 0.4199 MSKVLGSIISRNQAAFVPGQKIHDHILLAYELIRGYSRKGGMPRVMVQMDIRKAYDSVDWKAMQCILAEVGFPRKFISWIMLGVTTVSYQFNINGSISKHMKAARGLRQGDPMSPLLSVVIMEYLHRKLDCLSTEPEFKFHINCEKLNLVDLSFADDLLLFSKGDSGSVSMMMKKFEEFSMSTGMQVNPNKCQIYCGGMEESGITRIEGITGFKRGSLPFKYLGIPLTSRKLSNNQCMALADRIGGKMTHWSSHLLSYAGRVQMVNTVLFGCVNYWMCCLPLPKGVIRRIEAMCRSFVWSGTDKVTRKAPVAWDKVCTPKKYGGLGIKNLQVWNKDDVMQVEIKENGSWIIKSILNMREEVTGMQQWIHLNHGAKFQTKGMYMEHMKRNTLVEWRDLVCKNKASPREVFVFWLACQDRLATKDRLAKFGINVDQQCMFCDCIETVNHLFFEFRYSKKVWGEILGWLCIQHNIQDWNHERHWLIKISKSKNWRKHFVKAVVAETVYAVWLDRNARVFRNEIDDKHIVNRIIERITNRIWNYPKYRESCQTNDMDSSRGVLSITMEKFKMCTSGSNQSNWKKLDAREIQPSFRPEVAGKYRVANFEKRWTDMPVVDSLAASPNGGNPFKDFSYVRHAVSFLQQNSPAC 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi64g00017 646 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 3 227 IPR000477 -
Vivi64g00017 646 SMART pkinase_C_6 574 633 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vivi64g00017 646 Pfam zinc-binding in reverse transcriptase 376 459 IPR026960 -
Vivi64g00017 646 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 1 227 IPR000477 -
Vivi64g00017 646 PANTHER REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED 334 582 - -
Vivi64g00017 646 CDD RT_nLTR_like 3 227 - -
Vivi64g00017 646 ProSiteProfiles AGC-kinase C-terminal domain profile. 574 641 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vivi64g00017 646 SUPERFAMILY DNA/RNA polymerases 13 195 IPR043502 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi64g00017 577 643 AGC Kinase Gene Family AT3G08720 57.143 1.18e-18 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi64g00017 - - vvo:131623213 1336.63