LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi64g00010	ATGCTATCATCGCTTTTCAAACCGTGTTTCTCTCTTCCGTTTTCTACCCGCATTTCCGTTAACTCTTCTTCTATAATCCCTTTCAATTTCCCATTCCCTCTCTCTTCAACCCCTCGCCGCGCCATGTCAAAACCCCGACCCTCCGCCTTCGACGCCCTCATGTCCGGCGCACGCGCCGCCGCCGCCAAGAAGAAACCCCCTCCCCCTTCCTCATCCTCGTCTCCCAAGAAACGAAAATCTCCTCCGCCTTCCCCTAAGCCTCCTCAATCCACACTCTCCGCTCAAAACCCTAATACCAACGTCAAAACCCTAGAAACAGTTGAATCAGTTCAACAACCTCAAGAAACTGTTCAACAACCTAATGAAACAGTTCCCGAAGAACCACCGAACAAGATCCGTAACACTTTACCTTCTCATAAAGACGTAATCGCTGAATTGAAGGAACGAGTTCCGCAGCTGAAGAAGAAGCCGTCGAGTTTCGATCCGAGTGAGGTTGCTTGCTGGGAGAAAGATAAGCCTGTGCCGTTTTTGTTACTCTGTTTGGCGTTTGACATGATTGCCGCTGAGAGTGGGAGGATTGTGATGACTGACATTGTGTGTAATCTGTTGAGGACTGTTATACATGCTTCTCCCGATGATCTTGTTTCGGTTGTTTATTTATCTGCAAACAGAATCGCGCCGGCTCATGTAGGGTTGGAATTGGGAATTGGTGATGCCTCTATTATTAAGGCGCTTGCTGAGGCGTATGGAAGGACGGAGAAGCAGATCAAGAATCAGTATAAGGAAAAAGGTGACTTGGGCTTAGTTGCGAAAGCTAGCCGATCGTCTCAGTCTATGATGCGGAAGCCCGAACCTTTGACTATTACAAAGGTGTTCAACACATTTCATCTTATTGCAAAGGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAATCACATAAAGTCACTTCTTGTTGCTGCAATTGACTGTGAACCTCTATATATTATCCGTTTGCTACAGTCAAAATTGCGAATTGGATATGCCGAGCAAACTCTCTTAGCTGCATTAGGCCATGCTGCAGTGTACTCTGAAGAACATTCTAAACCGCCTTCTGAAGTTCAGTCTCCTTTTGAAGAGGCTGCTAAAATTGTTAAAAAAGTCTATTCCGTTCTTCCCGACTATGACAAAATTGTGTCTGCACTGCTTTCGCATGGTGTATGGGAGCTTCCAACGAAATGTGATTTTACTCCTGGTGTTCCTGTTGGGCCTATGCTGTCAAAAGCAACCAAAGGTGTAGCTGAAATTCTAAATAAGTTTCAGGATGTAGAGTTTACATGTGAATACAAATACGATGGAGAGCGTGCTCAGATACATTACTTGGAGAATGGCTCAGTAGAGATTTACAGTAGAAATGCTGAACGGAACACTGGGAAGTTTCCTGATGTTGTTGCAGCAGTTTCAAGGTTAAAGAAAACAACAGTGTCGTCCTTTATCCTTGATTGTGAACTTGTTGCATATGATCGTGCAAAACAGAGAATCCTTCCTTTCCAGGTGCTTAGTACTCGGGCCCGCAAAAATGTCAGCGTGAGTGACATAAAGGTTGAAGTTTGCATATTTGCTTTTGATTTGTTGTACCTCAATGGCCAAGCACTTCTTCAAGAAAACTTGAAAATCCGTAGAGAGCATCTCTACGGCTCTTTTGAGGAAGAGACTGGATTCTTTCAGTTTGCGACATCAACTACATCAAATGATGTCGAGGAGATACAAAAATTTCTTGACGAAGCTATTGATGCAAGTTGTGAGGGATTAATTATTAAAACATTACATGAAGACGCCACATATGAGCCCTCCAAGCGGTCACTCAACTGGCTGAAACTGAAGAAAGATTATATGGATAATATTGGGGACTCATTAGATTTGGTACCTATTGGTGCTTTTGCTGGTCGAGGGAAACGCACAGGAGTGTATGGTGCTTTTCTCCTTGCATGCTATGACCCTGATAGGGAAGAATTTCAAAGTCTTTGTAAGATAGGAACTGGATTCACAGAAAACGTGCTTGAAGAACGTTCTACTAGCCTTCGCTCTAAAGTGATTCCCAAACCAAAGGCATATTATCAATATGGAGAATCAGTCAAACCTGATGTCTGGTTTGAAGCTAGTGAGGTGTGGGAGGTAAAAGCCGCAGACCTGACCATTAGCCCTATTTACCGAGCTGCAGCGGGCACAGTAGATCCCAATAAGGGAATGTCTCTGCGATTTCCGCGTCTACTTCGAGTTCGGCCTGACAAAGCTCCGGAACAGGCCTCCTCTTCTGAGCAGATTGCTGAAATGTATAAAGCTCAGAAGCACAATCACAACGATATTCAGGATGCCAGACAGAATGATGATGAAGATGTTTAA	2382	0.4416	MLSSLFKPCFSLPFSTRISVNSSSIIPFNFPFPLSSTPRRAMSKPRPSAFDALMSGARAAAAKKKPPPPSSSSSPKKRKSPPPSPKPPQSTLSAQNPNTNVKTLETVESVQQPQETVQQPNETVPEEPPNKIRNTLPSHKDVIAELKERVPQLKKKPSSFDPSEVACWEKDKPVPFLLLCLAFDMIAAESGRIVMTDIVCNLLRTVIHASPDDLVSVVYLSANRIAPAHVGLELGIGDASIIKALAEAYGRTEKQIKNQYKEKGDLGLVAKASRSSQSMMRKPEPLTITKVFNTFHLIAKESGKDSQEKKKNHIKSLLVAAIDCEPLYIIRLLQSKLRIGYAEQTLLAALGHAAVYSEEHSKPPSEVQSPFEEAAKIVKKVYSVLPDYDKIVSALLSHGVWELPTKCDFTPGVPVGPMLSKATKGVAEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRNAERNTGKFPDVVAAVSRLKKTTVSSFILDCELVAYDRAKQRILPFQVLSTRARKNVSVSDIKVEVCIFAFDLLYLNGQALLQENLKIRREHLYGSFEEETGFFQFATSTTSNDVEEIQKFLDEAIDASCEGLIIKTLHEDATYEPSKRSLNWLKLKKDYMDNIGDSLDLVPIGAFAGRGKRTGVYGAFLLACYDPDREEFQSLCKIGTGFTENVLEERSTSLRSKVIPKPKAYYQYGESVKPDVWFEASEVWEVKAADLTISPIYRAAAGTVDPNKGMSLRFPRLLRVRPDKAPEQASSSEQIAEMYKAQKHNHNDIQDARQNDDEDV	793

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vivi64g00010	793	MobiDBLite	consensus disorder prediction	109	125	-	-
Vivi64g00010	793	ProSitePatterns	ATP-dependent DNA ligase signature 2.	595	621	IPR016059	GO:0003909
Vivi64g00010	793	MobiDBLite	consensus disorder prediction	109	135	-	-
Vivi64g00010	793	Pfam	ATP dependent DNA ligase C terminal region	646	757	IPR012309	GO:0003910\|GO:0006281\|GO:0006310
Vivi64g00010	793	FunFam	DNA ligase	626	785	-	-
Vivi64g00010	793	Gene3D	DNA ligase/mRNA capping enzyme	446	571	-	-
Vivi64g00010	793	CDD	Adenylation_DNA_ligase_I_Euk	406	624	-	-
Vivi64g00010	793	MobiDBLite	consensus disorder prediction	32	97	-	-
Vivi64g00010	793	PANTHER	DNA LIGASE 1/3 FAMILY MEMBER	70	789	-	-
Vivi64g00010	793	MobiDBLite	consensus disorder prediction	68	90	-	-
Vivi64g00010	793	Pfam	ATP dependent DNA ligase domain	417	621	IPR012310	GO:0003910\|GO:0005524\|GO:0006281\|GO:0006310
Vivi64g00010	793	MobiDBLite	consensus disorder prediction	772	786	-	-
Vivi64g00010	793	NCBIfam	ATP-dependent DNA ligase	233	773	IPR000977	GO:0003910\|GO:0005524\|GO:0071897
Vivi64g00010	793	SUPERFAMILY	ATP-dependent DNA ligase DNA-binding domain	157	407	IPR036599	GO:0003677\|GO:0003910\|GO:0006281\|GO:0006310
Vivi64g00010	793	SUPERFAMILY	DNA ligase/mRNA capping enzyme, catalytic domain	409	627	-	-
Vivi64g00010	793	Gene3D	-	151	419	IPR036599	GO:0003677\|GO:0003910\|GO:0006281\|GO:0006310
Vivi64g00010	793	FunFam	DNA ligase	152	419	-	-
Vivi64g00010	793	ProSiteProfiles	ATP-dependent DNA ligase family profile.	523	659	IPR012310	GO:0003910\|GO:0005524\|GO:0006281\|GO:0006310
Vivi64g00010	793	ProSitePatterns	ATP-dependent DNA ligase AMP-binding site.	441	449	IPR016059	GO:0003909
Vivi64g00010	793	CDD	OBF_DNA_ligase_I	629	774	-	-
Vivi64g00010	793	Gene3D	-	427	625	-	-
Vivi64g00010	793	Pfam	DNA ligase N terminus	175	350	IPR012308	GO:0003677\|GO:0003910\|GO:0006281\|GO:0006310
Vivi64g00010	793	MobiDBLite	consensus disorder prediction	755	793	-	-
Vivi64g00010	793	Gene3D	-	626	788	IPR012340	-
Vivi64g00010	793	FunFam	DNA ligase	417	623	-	-
Vivi64g00010	793	SUPERFAMILY	Nucleic acid-binding proteins	629	775	IPR012340	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi64g00010	3	779	Core DNA Replication Machinery Family	AT1G08130	65.561	0.0	1047

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi64g00010	K10747		-	gmx:100783155	1140.95