Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi64g00003 ATGTCTCGCCCTATTGAGCCATTGAAAGAGATCAATGATTCAAAAGATTTGTGGAAGATCGCTGTTAGATGCAAACATCTATGGACTGTCACAAGTTCTTCAAACAAAGAACACATGGAGATGGTTTTGGTTGATTATAAGCGTGATATGATTCAGGCTGTTGTCCCTGCTTATTTGCTTTCCAAATTCAAATCTCAAATTGAAACAGGAAACTCTTATATCATGCAAAGTTTTAAAGTTGGGAGGAATGATTTTGCTTTTAAGTCGACAAATCATACATACAAATTGGTTTTTTGTGGCTCAACTTCTGTTAAGAAGGCAGAATTTCCTGACATCCCTCATAACTATCTTAACATTATTGCTTTGAATTCCATAGTTGAAGGAAGGTTTCAATCAAATGTTTTGGTTGATTTGATTGGAGGAATCACTGATATCACTCAAACCCAAGTTAACGGTGACAACAGCAAGAACAGAATAGTTTTTTCAATTGTAGATGCCAGCAAAACAGTTGTACAATGTACTCTTTGGGGCCAACTTGCAGTTCAGCTATATGAGTATTATAAGAATAATAAGCAAGCATCAAATATTGTCATTGTGCTAATCAATGCAAGGGTTAAAGAGGCTCAAGGAGGATTTCCAGTTAGTGTTTCCAACACATGGAATGGAACGAAACTGTTGATTAATGACCTTGCTATTGAGGAAGTCAAGAGTCTAAAAGAAAGACTTGGTGTTGATTTGCCTTTGTTATCATCTTCAAGTGTACAAGTTGAGACGACGCAAAACTCATTTTATTCTGACTATGACAAATTTGTTTGGAAGGCTGAAATAATGAGTCTCTCTGAGATAACAAATCTGCAACATGAAACAACCTGTGTTACCGTTGCTACCCTCGATAAGTTTGACGCTGGGCAGATGGGGTGGTACTATGATGGATGTGTGGAATGTACAAGGAGTGTGACTGCCAAGGATGCAAAGCTGAAGTGTTTTAAGGATCATATTAGCCCAGAACCTGTGCCACGGTATAAACTTGATATAACAGCTGTTGACGGCAGTTCGAAGGCAAAGTTCGTCTTTTGGGACACAGACTGCGTGAAGTTAATTGGGAAGTCTGCTCTTCAAATGAAGATGGATTTAACACAGTCTGTTCATTACGATCCACTTGAGTTCCCTTACGAACTTGACTCCATATTGGCAAAAGAATTGGCAATTAGAGCTGTTTATCAGCCTAAAAATGGGAGACTTTCTGTCATTGGCTTCAAGACTGGTGAAGATGTGCGTAATAAAATTAAGGAGAGTTTCAAATTTGAAGAGGAACCTCTATCTGCATCTGCAGAAAATGATCTGAGCATTGAAAATTCAGGACTCACTCCATGTAAGAGACTTATGAATGATGCAGTAGAAGATAATGATAGTGTACAACAATCATCAACCAAGATGGCCAAAGATATTAAACAGGAGAAATAG 1464 0.3798 MSRPIEPLKEINDSKDLWKIAVRCKHLWTVTSSSNKEHMEMVLVDYKRDMIQAVVPAYLLSKFKSQIETGNSYIMQSFKVGRNDFAFKSTNHTYKLVFCGSTSVKKAEFPDIPHNYLNIIALNSIVEGRFQSNVLVDLIGGITDITQTQVNGDNSKNRIVFSIVDASKTVVQCTLWGQLAVQLYEYYKNNKQASNIVIVLINARVKEAQGGFPVSVSNTWNGTKLLINDLAIEEVKSLKERLGVDLPLLSSSSVQVETTQNSFYSDYDKFVWKAEIMSLSEITNLQHETTCVTVATLDKFDAGQMGWYYDGCVECTRSVTAKDAKLKCFKDHISPEPVPRYKLDITAVDGSSKAKFVFWDTDCVKLIGKSALQMKMDLTQSVHYDPLEFPYELDSILAKELAIRAVYQPKNGRLSVIGFKTGEDVRNKIKESFKFEEEPLSASAENDLSIENSGLTPCKRLMNDAVEDNDSVQQSSTKMAKDIKQEK 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi64g00003 487 Gene3D - 110 244 IPR012340 -
Vivi64g00003 487 Pfam Domain of unknown function DUF223 40 135 IPR003871 -
Vivi64g00003 487 SUPERFAMILY Nucleic acid-binding proteins 118 249 IPR012340 -
Vivi64g00003 487 Gene3D - 2 107 IPR012340 -
Vivi64g00003 487 MobiDBLite consensus disorder prediction 464 487 - -
Vivi64g00003 487 PANTHER OS03G0429900 PROTEIN 10 441 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi64g00003 487 SUPERFAMILY Nucleic acid-binding proteins 275 406 IPR012340 -
Vivi64g00003 487 SUPERFAMILY Nucleic acid-binding proteins 4 108 IPR012340 -
Vivi64g00003 487 CDD RPA1_DBD_B_like 137 242 - -
Vivi64g00003 487 Gene3D - 267 427 IPR012340 -
Vivi64g00003 487 CDD RPA1_DBD_A_like 19 104 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi64g00003 1 371 Core DNA Replication Machinery Family AT5G08020 22.785 3.25e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi64g00003 - - vvo:131658312 803.897