Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi647g00011 ATGGCTGAAATTCACACACAAACTCCAACAATCAGTCCCACACCAAGCAAACCATGTAACAACCCTCCACAACAACATAGTCTCAACTCAATGGTTCTCATAGCAGCTATAGTATGTGCTCTACTCTGTGCTCTTGGCCTCAACACAATGCTACAATGCGTGTTCCAATGCGCGAACCGCGTCCTCACCGAACCTCTCCAATGGATGGCTTCTCGGAGGCGCAATTCCGGACTCAAGAAGAAAGATAGAGTTGCTTTGCCAACATCAGTTTATAATACTCATTCAGGTGGATCATCATCAACTCCTCAAAGTTTGGATTCTAGTTGTGCTATTTGCTTAGCTGAGTTTTGTGATGGTGATAATATGAAGATGCTACCGAAGTGTAATCATCGTTTTCATGTTGGTTGTATTGATAAGTGGTTGCTTTCTCATTCTTCTTGTCCTACTTGTAGGAACATGATCAAGTCTCGTGATTCTGTACACTGCTTAAGCATTGTTATATCATAG 507 0.4221 MAEIHTQTPTISPTPSKPCNNPPQQHSLNSMVLIAAIVCALLCALGLNTMLQCVFQCANRVLTEPLQWMASRRRNSGLKKKDRVALPTSVYNTHSGGSSSTPQSLDSSCAICLAEFCDGDNMKMLPKCNHRFHVGCIDKWLLSHSSCPTCRNMIKSRDSVHCLSIVIS 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi647g00011 168 SUPERFAMILY RING/U-box 102 157 - -
Vivi647g00011 168 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Vivi647g00011 168 Pfam Ring finger domain 108 151 IPR001841 -
Vivi647g00011 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 157 IPR013083 -
Vivi647g00011 168 PANTHER RING-H2 FINGER PROTEIN ATL78 11 155 IPR044602 GO:0016567|GO:0016740
Vivi647g00011 168 MobiDBLite consensus disorder prediction 1 23 - -
Vivi647g00011 168 SMART ring_2 109 150 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi647g00011 11 166 C3H Transcription Factor Family AT3G10910 35.165 3.62e-29 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi647g00011 - - psat:127138077 329.717