Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi647g00004 ATGGCGCATGCTGATGTGAGAGACTTACAGCTCACTTTTCTACCCGCCGGCCGGAAAATCACCGCCACCGATGACTCCGATGACTTGGAACATGCATTGCTCCTTGACTCCCGCGACGGAGTTGACGATGAGAGAAGAAGAATTCAGGTGAGAATCTCCGGTATGACATGCACCGCTTGCTCTAATTCCATCGAATCAGCTTTGAAAGCGGTTGACGGAGTTCTCAGTGCTTCCGTTGCTCTACTGCAGAACAAAGCTGACGTGGTTTTCAACCCTGCTATGCTTAAGGATGAAGACATTAAAAATGCAATTGAAGATGCAGGGTTTGAAGCAGACATATTACCCGAATCCAGCGGACTTGGAAATATTCCACATGAAACCCTGGTTGGACAGTTCACAATTGGAGGTATGACATGTGCAGCCTGTGTAAATTCCGTTGAAGGTATTTTAAGAAATCTTCCAGGGGTTAAAAGGGCCGTGGTAGCTTTGGCTACTTCGTTAGGCGAAGTCGAATATGATCCAAGTGTAATTAGTAAAGATGATATAGTCAATGCAATCGAAGATTCTGGCTTTGAAGCCTTGTTTGTACAGAGCAATGAGCAGGATAAAATAATTTTTGGAGTTGTTGGTGCGTACAGTCTAATAGATGCACAAGTCATAGAAGACATGCTTAGTAACATGAAAGGAGTAAGGCAGTTTAATTTTGACCGGATATCAGGTGAATTAGATGTTCTATTCGATCCTCAAGTTCTCAGTCCAAGGTCCTTAGTTGATGGGATCCACATGGAAAGCAATGGAAAGTTTGAATTACATGTTAAAAGCCCTTATTCAAGGATGGCTTCTAAGGATGTTGAAGAAACCTCATCTATATTTCGGGTCTTTATCTCCAGCCTTTTACTTAGTGTTCCTCTCTTCTTCATGAAGGTAGTGTGTCCTCATATTCCATTTATGTATTCCTTGTTACTTCGGCGATGTGGGCCTTTTCTCATGCGTGATTGGGTGAAATGGGCATTAGTTAGTGTCATCCAATTTGGAATTGGGAAGCGCTTTTATATTGCAGCTGGAAGGGCTCTTAGAAATGGTTCAACAAACATGGATGTCTTGATTGTTGTGGGAACTACCACTTCTTACGTTTATTCTGTTTATGCTCTTCTATATGGCGCTCTTACTGGATTTTGGTCCCCAACTTACTTTGAAACAAGTGCTATGCTTATAACATTTGTTTTATTGGGGAAGTATTTGGAAGTCCTTGCTAAGGGAAAGACATCTGATGCCATCAAAAAATTAGTAGAACTTGCTCCTGCAACAGCTTTATTAATTATTAATGATAAAGATGGTAAGTCTTTTGAAGAAAGAGAAATTGATTCTTTGCTTGTTCAACCTGGTGACACATTGAAAACTCTTCCTGGTACAAAGATTCCTGCTGATGGTATTGTTACTTGGGGCTCAAGTTATGTAAATGAGAGCATGGTAACCGGTGAATCTGTACCTGTTTTGAAGGAGGTGAATGGTTCTGTTATTGGGGGTACAATAAATATGCATGGCGTCCTTCACATTAAAGTTACTAAAGTAGGATCTGATACAGTTTTGAGTCAGATAATAAGTTTGGTTGAAACAGCACAGATGTCCAAAGCTCCCATTCAGAAGTTTGCTGATTATGTAGCAAGCATATTTGTTCCGACCGTTGTTTCTTTGGCCTTGTTGACATTTTTGGGTTGGTATATTGCTGGAGCTGTTGGAGCTTACCCAGAAACATGGCTGCCAGAGAATGGAAATCACTTTGTGTTTGCCCTAATGTTCTCAATATCTGTAGTGGTGATTGCATGTCCATGTGCACTTGGCTTAGCAACACCAACAGCCGTCATGGTGGGAACAGGGGTTGGGGCTAACAATGGTGTATTAATTAAAGGAGGAGATGCCTTGGAAAGGGCTCAGGTGGTGAAGTATGTGATATTTGATAAAACAGGCACTCTAACTCAGGGAAAAGCCAGTGTTACTACTGCCAAGGTATTCACTGGAATGCAACGTGGGGAATTTCTTAAATTGGTGGCTTCTGCTGAGGCTAGCAGTGAACACCCATTAGCAAAAGCAGTATTAGCATATGCACGCCATTTTCATTTCTTCGATGATTCTTCAGCTACTACACAGAATGATGTGAAGTCTGGGTGGCTTTTTGATGTCACAGACTTCTCTGCTCTCCCAGGAAGAGGTGTTCGATGCTCTATAAACGGGAGGCTTATTTTGGTTGGCAACAGGACGTTGATGGTGGAAAATGATATTGATATTTCAAAAGAAGTGGAGAATTTTGTTGTTGAGCTGGAACGAAATGCGCAGACAGGGATACTAGTAGCATATGATAATATATTGATCGGAGCTTTGGGGGTTGCAGACCCACTAAAAAGAGAAGCTTCTGTGGTTATAGAGCGCCTCCAGAAAATGGGTGTCATACCTGTTATGGTTACAGGAGATAACTGGAGAACAGCTAATGCTGTTGCCAAGGAGGTTGGCATCCAAGATGTGAGAGCAGAGGTGATGCCTGCGGGGAAAGCTGACATTGTTCGTTTATTCCAAATGGATGGAAGCATAGTTGCAATGGTGGGCGATGGTATCAACGATTCTCCAGCATTAGCTGCTGCTGACGTAGGCATGGCAATTGGGGCTGGAACTGATGTCGCAATAGAAGCTGCTAACTTCGTTTTGATGAGAAATAACTTGGAAGATGTGATCACAGCCATCCATCTTTCTCGGAAGACGTTTGATCGTATTAGATTGAATTACGTATTCGCAATGGCTTACAATGTTGTTGCTATACCAGTTGCAGCTGGGGTTTTATATCCTTCACTAGGTATCAAGCTGCCACCATGGGTTTCTGGTGCATGCATGGCTCTGTCTTCTGTAAGTGTTGTATGCTCTTCTTTGCTTCTTAAAAGGTATAGAAGACCCATACTTCCCACAGTTCCTGAAATAGTTGTAGAATAA 2979 0.423 MAHADVRDLQLTFLPAGRKITATDDSDDLEHALLLDSRDGVDDERRRIQVRISGMTCTACSNSIESALKAVDGVLSASVALLQNKADVVFNPAMLKDEDIKNAIEDAGFEADILPESSGLGNIPHETLVGQFTIGGMTCAACVNSVEGILRNLPGVKRAVVALATSLGEVEYDPSVISKDDIVNAIEDSGFEALFVQSNEQDKIIFGVVGAYSLIDAQVIEDMLSNMKGVRQFNFDRISGELDVLFDPQVLSPRSLVDGIHMESNGKFELHVKSPYSRMASKDVEETSSIFRVFISSLLLSVPLFFMKVVCPHIPFMYSLLLRRCGPFLMRDWVKWALVSVIQFGIGKRFYIAAGRALRNGSTNMDVLIVVGTTTSYVYSVYALLYGALTGFWSPTYFETSAMLITFVLLGKYLEVLAKGKTSDAIKKLVELAPATALLIINDKDGKSFEEREIDSLLVQPGDTLKTLPGTKIPADGIVTWGSSYVNESMVTGESVPVLKEVNGSVIGGTINMHGVLHIKVTKVGSDTVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVSLALLTFLGWYIAGAVGAYPETWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVGTGVGANNGVLIKGGDALERAQVVKYVIFDKTGTLTQGKASVTTAKVFTGMQRGEFLKLVASAEASSEHPLAKAVLAYARHFHFFDDSSATTQNDVKSGWLFDVTDFSALPGRGVRCSINGRLILVGNRTLMVENDIDISKEVENFVVELERNAQTGILVAYDNILIGALGVADPLKREASVVIERLQKMGVIPVMVTGDNWRTANAVAKEVGIQDVRAEVMPAGKADIVRLFQMDGSIVAMVGDGINDSPALAAADVGMAIGAGTDVAIEAANFVLMRNNLEDVITAIHLSRKTFDRIRLNYVFAMAYNVVAIPVAAGVLYPSLGIKLPPWVSGACMALSSVSVVCSSLLLKRYRRPILPTVPEIVVE 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi647g00004 992 CDD HMA 49 111 IPR006121 GO:0046872
Vivi647g00004 992 FunFam Copper-exporting P-type ATPase A 126 196 - -
Vivi647g00004 992 Gene3D - 747 797 IPR023299 GO:0000166
Vivi647g00004 992 Gene3D - 658 746 IPR023299 GO:0000166
Vivi647g00004 992 FunFam Copper-exporting P-type ATPase 746 797 - -
Vivi647g00004 992 CDD HMA 131 193 IPR006121 GO:0046872
Vivi647g00004 992 FunFam Copper-exporting P-type ATPase A 44 114 - -
Vivi647g00004 992 Pfam E1-E2 ATPase 432 630 - -
Vivi647g00004 992 ProSitePatterns Heavy-metal-associated domain. 52 82 IPR017969 GO:0046872
Vivi647g00004 992 SUPERFAMILY Calcium ATPase, transmembrane domain M 389 941 IPR023298 -
Vivi647g00004 992 SUPERFAMILY HMA, heavy metal-associated domain 127 200 IPR036163 GO:0046872
Vivi647g00004 992 Gene3D - 618 923 IPR023214 -
Vivi647g00004 992 ProSiteProfiles Heavy-metal-associated domain profile. 128 194 IPR006121 GO:0046872
Vivi647g00004 992 PRINTS P-type cation-transporting ATPase superfamily signature 866 885 - -
Vivi647g00004 992 PRINTS P-type cation-transporting ATPase superfamily signature 487 501 - -
Vivi647g00004 992 PRINTS P-type cation-transporting ATPase superfamily signature 813 823 - -
Vivi647g00004 992 PRINTS P-type cation-transporting ATPase superfamily signature 889 901 - -
Vivi647g00004 992 PRINTS P-type cation-transporting ATPase superfamily signature 791 802 - -
Vivi647g00004 992 PRINTS P-type cation-transporting ATPase superfamily signature 651 665 - -
Vivi647g00004 992 ProSitePatterns E1-E2 ATPases phosphorylation site. 653 659 IPR018303 -
Vivi647g00004 992 Pfam haloacid dehalogenase-like hydrolase 647 880 - -
Vivi647g00004 992 NCBIfam HAD-IC family P-type ATPase 404 679 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi647g00004 992 NCBIfam HAD-IC family P-type ATPase 737 946 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi647g00004 992 ProSitePatterns Heavy-metal-associated domain. 134 163 IPR017969 GO:0046872
Vivi647g00004 992 FunFam Probable copper-transporting ATPase HMA5 772 923 - -
Vivi647g00004 992 SFLD p-type atpase 633 918 IPR044492 -
Vivi647g00004 992 SUPERFAMILY HMA, heavy metal-associated domain 43 115 IPR036163 GO:0046872
Vivi647g00004 992 Gene3D - 130 195 - -
Vivi647g00004 992 CDD P-type_ATPase_Cu-like 294 962 - -
Vivi647g00004 992 Pfam Heavy-metal-associated domain 50 110 IPR006121 GO:0046872
Vivi647g00004 992 Pfam Heavy-metal-associated domain 132 192 IPR006121 GO:0046872
Vivi647g00004 992 FunFam Copper-transporting ATPase RAN1 658 745 - -
Vivi647g00004 992 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 38 981 - -
Vivi647g00004 992 Gene3D - 419 541 - -
Vivi647g00004 992 NCBIfam copper ion binding protein 48 111 IPR006122 GO:0005507
Vivi647g00004 992 NCBIfam copper ion binding protein 131 193 IPR006122 GO:0005507
Vivi647g00004 992 SFLD Haloacid Dehalogenase 633 918 - -
Vivi647g00004 992 PRINTS Copper-transporting ATPase 1 signature 102 122 - -
Vivi647g00004 992 PRINTS Copper-transporting ATPase 1 signature 47 72 - -
Vivi647g00004 992 PRINTS Copper-transporting ATPase 1 signature 73 96 - -
Vivi647g00004 992 SUPERFAMILY HAD-like 650 972 IPR036412 -
Vivi647g00004 992 FunFam Copper-transporting ATPase 1, putative 419 541 - -
Vivi647g00004 992 Gene3D - 45 116 - -
Vivi647g00004 992 SUPERFAMILY Calcium ATPase, transduction domain A 451 537 IPR008250 -
Vivi647g00004 992 ProSiteProfiles Heavy-metal-associated domain profile. 46 112 IPR006121 GO:0046872
Vivi647g00004 992 NCBIfam heavy metal translocating P-type ATPase 365 975 IPR027256 GO:0006812|GO:0016020|GO:0019829
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi647g00004 7 992 Primary Pumps ATPases AT5G44790 71.244 0.0 1430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi647g00004 K17686 - gmx:100804960 1623.22