Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi640g00030 ATGGGAAGAGGTAGGGTTCAATTGAAACGGATCGAGAACAAAACAAGTCAGCAAGTAACATTCTTCAAAAGAAGAACTGGACTTCTCAAGAAAGCTAATGAAATTTCTGTTCTTTGTGATGCTCAAGTTGCTTTGATTATGTTCTCTACCAAAGGAAAACTTTTTGAGTATTCCTCAGCACCAAGTATGGAAGATATTTTGGAAAAATATGAAAGACAAAATCATACAGAACTTACTGGAGCTGCTACAAATGAAACACCGGGAAATTGGACTTTTGAATACATGAAGCTAACTGCTAAGGTTCAAGTCTTGGAGAGGAACTTAAGGAACTTTGTGGGACATGATCTGGATCCTTTAAGTGTGAAAGAGCTTCAGAGTTTGGAGCAACAGCTCGACACATCGCTTAAGCGCATCCGAACAAGAAAGAATCAAGTTATGAATCAATCCATCTCCGAGCTGCACAAAAGAGCGAGGGCATTGCAGGAACAAAACAGCAAGCTAGCAAAGACAAAAGAGAAAGAGAAGATGGTGAATGAACATCCACAGAGATTCATTGAAAGCAATGGCATAGGGCAATGTTCATCCACTCTCAACTTAGGGTTTCAACCACAGGTTCTACCACAACAAAGACTAGTTCCTTCTCTATCTCTCAGTGGGGCTATACAAGCAAGAGGGTCATTGGAATTTGAAGAAACAGGTGAAGCTCAAACTGTTCCTATCAACAATAATAATAATCTTATTCCAGCATGGATGCTACAACATCTTACCAACTAG 774 0.3966 MGRGRVQLKRIENKTSQQVTFFKRRTGLLKKANEISVLCDAQVALIMFSTKGKLFEYSSAPSMEDILEKYERQNHTELTGAATNETPGNWTFEYMKLTAKVQVLERNLRNFVGHDLDPLSVKELQSLEQQLDTSLKRIRTRKNQVMNQSISELHKRARALQEQNSKLAKTKEKEKMVNEHPQRFIESNGIGQCSSTLNLGFQPQVLPQQRLVPSLSLSGAIQARGSLEFEETGEAQTVPINNNNNLIPAWMLQHLTN 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi640g00030 257 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi640g00030 257 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Vivi640g00030 257 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Vivi640g00030 257 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Vivi640g00030 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi640g00030 257 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 174 - -
Vivi640g00030 257 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi640g00030 257 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi640g00030 257 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi640g00030 257 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi640g00030 257 Coils Coil 124 170 - -
Vivi640g00030 257 ProSiteProfiles K-box domain profile. 87 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi640g00030 257 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Vivi640g00030 257 Pfam K-box region 88 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi640g00030 1 177 MADS-box Gene Family AT1G26310 57.459 1.63e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi640g00030 K-box 3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi640g00030 K09264 - gmx:100788956 320.472