Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi640g00019 ATGGTGGTTGTTTTAGCTTCATCCTCTGATGCTAATGGTGGGATTGGATGCTGGGACCTTAACACAGGTACTGAGCAGATCCGCTATAAATCATTATCTTCCCCTGGCCATGGACTGGTCTCTGTTGGTGATCGTTTTCTTGCATCATCTCAGCTCCGAGACGCATCAACTTCCTCTGGTTCTGTTTTCTTCTGGTCCTGGTCCAAGCCTCAAGTCGAAGTAAAAAGCTTTCCCTCTGAACCTATTACACCTCTTGCGGCTAATCACAGCGGCACCTATCTTGTTGGTGGAGGTTTGTCAGGTGAAATATACTTGTGGGAGGTTGAAACCGGCAAATTGCTTAGGAAGTGGCATGGTCATAATACAGCTGTTACTTGCCTGGTATTTTCTGAAGACGACTCACTTCTAATATCTGGTTTTAAAAACGGAAGCGTACGAGTTTGGTCTCTCTTAATGATATTTGATGACGTGAGAAGACGGGAAGCAAGCCAGATTTACGAGTATAGTTTTTCAGATCACACCTTATGTGTAAACGATGTTGTGATTGGTTCTGGAGGGTGCAATGCAATTATAGTTTCAGCATCAGATGATCGGACCTGCAAGGTATGGAGCTTATCTAATGGAATGCTACAGAGAAATATAGTATTCCCTTCAAAGATTAAAGCTATTGCATTGGATCCTGCTGAACATGTCTTTTATGCTGGCAGTGAAGATGGAAGAATATTTATCGTTGCACTTAACACCACAAAAATTGCTACCAATAATCAAGTTTCGTATATCATTGATTCATTTTCTAACCACAGCAAGGCAGTTACTTGCTTGGCATATAGCGCAGGCGATAACTGTTTAATATCGGGATCTGAGGATGGAATAGTTCGAGTTTGGAATGCAAGTACTCATAACATTATCCGTGTCTTTAAACATGCTAAAGGACCAATAACTAACATTATTGTCGTTAGACCCGAAAATGATTCAAGCAATCATATGTCATCTAATTTACAAGCAGCCTCTAAAAAGAAGGGAGCTCAATTTCCTCCTTTGGAAAAATATGCAAATTCAATAGACGGCGGACATTCAGTTACGAAGACTATCGTCAGTCTTGGTGATAGCGATAGATGCATGGATGTTTCATACCTTAGTTCTCATGTGATTTCTAATTACAGTAAAGAACTTCAGAATCAAGGTTCAGCTGCCGCTTCTGAAATGGAGATAGAGAAACTTAAACACGAATGCCAAAAGTCTGCGCAGATGGTTAATCAATGGAAGAAAATGTATGAAAACTTGCATCAATTTTGCGTAAAAGAGCTGGTAGATGAAAATAAGAATTAA 1329 0.4018 MVVVLASSSDANGGIGCWDLNTGTEQIRYKSLSSPGHGLVSVGDRFLASSQLRDASTSSGSVFFWSWSKPQVEVKSFPSEPITPLAANHSGTYLVGGGLSGEIYLWEVETGKLLRKWHGHNTAVTCLVFSEDDSLLISGFKNGSVRVWSLLMIFDDVRRREASQIYEYSFSDHTLCVNDVVIGSGGCNAIIVSASDDRTCKVWSLSNGMLQRNIVFPSKIKAIALDPAEHVFYAGSEDGRIFIVALNTTKIATNNQVSYIIDSFSNHSKAVTCLAYSAGDNCLISGSEDGIVRVWNASTHNIIRVFKHAKGPITNIIVVRPENDSSNHMSSNLQAASKKKGAQFPPLEKYANSIDGGHSVTKTIVSLGDSDRCMDVSYLSSHVISNYSKELQNQGSAAASEMEIEKLKHECQKSAQMVNQWKKMYENLHQFCVKELVDENKN 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi640g00019 442 Gene3D - 4 154 IPR015943 GO:0005515
Vivi640g00019 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 82 116 IPR001680 GO:0005515
Vivi640g00019 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 305 IPR001680 GO:0005515
Vivi640g00019 442 ProSitePatterns Trp-Asp (WD) repeats signature. 283 297 IPR019775 -
Vivi640g00019 442 PRINTS G protein beta WD-40 repeat signature 136 150 IPR020472 -
Vivi640g00019 442 PRINTS G protein beta WD-40 repeat signature 283 297 IPR020472 -
Vivi640g00019 442 PRINTS G protein beta WD-40 repeat signature 191 205 IPR020472 -
Vivi640g00019 442 FunFam Protein ROOT INITIATION DEFECTIVE 3 1 243 - -
Vivi640g00019 442 SMART WD40_4 70 107 IPR001680 GO:0005515
Vivi640g00019 442 SMART WD40_4 257 296 IPR001680 GO:0005515
Vivi640g00019 442 SMART WD40_4 163 204 IPR001680 GO:0005515
Vivi640g00019 442 SMART WD40_4 110 149 IPR001680 GO:0005515
Vivi640g00019 442 SMART WD40_4 207 245 IPR001680 GO:0005515
Vivi640g00019 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 117 150 - -
Vivi640g00019 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 117 150 IPR001680 GO:0005515
Vivi640g00019 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 299 - -
Vivi640g00019 442 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 9 313 IPR011047 -
Vivi640g00019 442 Gene3D - 155 382 IPR015943 GO:0005515
Vivi640g00019 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 213 IPR001680 GO:0005515
Vivi640g00019 442 PANTHER WD-REPEAT PROTEIN 18 2 436 IPR045227 -
Vivi640g00019 442 Pfam WD domain, G-beta repeat 111 149 IPR001680 GO:0005515
Vivi640g00019 442 Pfam WD domain, G-beta repeat 170 204 IPR001680 GO:0005515
Vivi640g00019 442 Pfam WD domain, G-beta repeat 262 296 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi640g00019 80 336 Eukaryotic Initiation Factors Gene Family AT2G46290 22.593 1.07e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi640g00019 K14829 - gmx:100791195 643.269