Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi640g00012 ATGGCTAGGTTTTGTAAAGGCAATCAAGATGAAGAACGGTTGGACGATGATGATCAAGACCTCTATACTGTCAACACTTCTTCCGCTCTCAATATCAACAACAACAACAGCAATGTGAAGGTGGATGAAACTGGTAGAGGTAAAAGAGCGAACCCTCATCGTTCTAAGCATTCTGAGACTGAGCAGCGTAGAAGAAGCAAAATTAACGAAAGATTTCAGGTTCTGAGAGAACTTATACCTCAAAATGATCAAAAAAGAGATAAAGCTTCTTTTTTGTTGGAGGTTATTGAATACATTCAGTTCCTACAGGAAAAGTTACAAATTTATGAACAATCTTATGAAGGATGGAGTCAGGAGCCAAGCAAATTAATTCCATGGAGAAATCATCACGGACCTGCCGAAAATACTATAGATCCTTCTCGAGCTATTCAAAATGGGTCTATTCATGAAACACCTAACAACGTCTCTCTGTCATTGCCTAAAAACGTACAGAACCCAATAGAACCTGACCCCTCCACAACTATTCAGAAGGGTTGCACCCCTGGTTCATCCGGAGAAACAGTTCCCTTGACAATGCAAATGCGATTGGACATGTTTGATCCGGTTGTTAGCAGTGGTATGGTGACTCAACAGATGCTGGAGTTGCCTGTATCTAATGCTGGCATGGCTTCGAATCTCCAGCCTCAAGTATGGCTAAGCAAACCAAACAAGGACGACTACGTTGTTCCAGATAATACATTGAAGGAAGAAGAGGAGCTGAAAATTGATAGTGGGTCAGAGTCAGATAGCATCTCAAGTGCCTACTCTCAAAGAATATTAGGTACTCTCACCCAAGCGCTGCAATCTTCGGGTGTAGATTTGTTGCAGACCAGTGTTTCGGTGCAAATTGATGTTGGTAGACGAGCAAATACTGGGTCAGCCCCTTGCCAATATGGCTCAAAGGGTCATGAAAATCAGTATATGAGCAATCAAGCAATGACATGTGATTACTTCAGTGAGGATTCTGAACAAAGTCCAAAGAGGTTCAGACGAGAAGCTAGCTAG 1044 0.4215 MARFCKGNQDEERLDDDDQDLYTVNTSSALNINNNNSNVKVDETGRGKRANPHRSKHSETEQRRRSKINERFQVLRELIPQNDQKRDKASFLLEVIEYIQFLQEKLQIYEQSYEGWSQEPSKLIPWRNHHGPAENTIDPSRAIQNGSIHETPNNVSLSLPKNVQNPIEPDPSTTIQKGCTPGSSGETVPLTMQMRLDMFDPVVSSGMVTQQMLELPVSNAGMASNLQPQVWLSKPNKDDYVVPDNTLKEEEELKIDSGSESDSISSAYSQRILGTLTQALQSSGVDLLQTSVSVQIDVGRRANTGSAPCQYGSKGHENQYMSNQAMTCDYFSEDSEQSPKRFRREAS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi640g00012 347 Coils Coil 99 119 - -
Vivi640g00012 347 CDD bHLH_AtBIM_like 54 127 - -
Vivi640g00012 347 Gene3D - 50 123 IPR036638 GO:0046983
Vivi640g00012 347 SMART finulus 58 108 IPR011598 GO:0046983
Vivi640g00012 347 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 8 344 IPR044295 GO:0003700|GO:0006351|GO:0046983
Vivi640g00012 347 MobiDBLite consensus disorder prediction 26 41 - -
Vivi640g00012 347 MobiDBLite consensus disorder prediction 26 68 - -
Vivi640g00012 347 MobiDBLite consensus disorder prediction 42 68 - -
Vivi640g00012 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 52 102 IPR011598 GO:0046983
Vivi640g00012 347 Pfam Helix-loop-helix DNA-binding domain 54 103 IPR011598 GO:0046983
Vivi640g00012 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 131 IPR036638 GO:0046983
Vivi640g00012 347 FunFam BHLH domain class transcription factor 50 122 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi640g00012 3 305 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 42.173 7.92e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi640g00012 HLH 1.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi640g00012 - - mtr:11428511 540.036