Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi639g00008 ATGACTAGAAAAAAGCTGAAGCTTGCTTTCATTGAGAAGGATACCGCAAGGAAACTAGCATACAAGAATAGGAAGAATAGTTTAGTGAAGAAAGTTGATGAACTTACAACCCTTTGCGGTATCGATGCTTGTGCTATTATTTATGGCCCATACGATCCTCAACCTGAGATCTGGCCATCTCCGTCCGGAGTACAAAATGTGCTTTCAAAGTTCAAGACAGCGTCTGAGTTTGATCAAAGAAAAAAGATGGTGAATCAGGAGAGTTTTTTGAAACAAAGGGTTGAGAATGCTGAAAAGAAACTTAGAAAGCAATTGAGAGACAACAAAGAAAAAGAGACAACCATGCTCATGCTTCAATGTCTCAATGCTGGGGGGATCGTGCCGAACGACAGTTCGGTGGATGGTTTGAATGATCTTACATGGATGATTGATAGGAATCTGAAGGAGATTGGCAGAAGGATAGAATCAATTGACAGCAACAGTAATATTCCTCAAAATCAAAATGAAAATCAAGTTGCCACCGCTCAAAGCCAAGAACAACTCCAAGTGGATCCGCCTCTGCCACTACTACCACCACCGCCGCCAGCACCAACAGTGTCTGATATTGATGAAGTTGAAATGATGAGTAGGTTGGGATGGCTATGA 645 0.4186 MTRKKLKLAFIEKDTARKLAYKNRKNSLVKKVDELTTLCGIDACAIIYGPYDPQPEIWPSPSGVQNVLSKFKTASEFDQRKKMVNQESFLKQRVENAEKKLRKQLRDNKEKETTMLMLQCLNAGGIVPNDSSVDGLNDLTWMIDRNLKEIGRRIESIDSNSNIPQNQNENQVATAQSQEQLQVDPPLPLLPPPPPAPTVSDIDEVEMMSRLGWL 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi639g00008 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Vivi639g00008 214 Coils Coil 80 114 - -
Vivi639g00008 214 MobiDBLite consensus disorder prediction 158 183 - -
Vivi639g00008 214 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi639g00008 214 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vivi639g00008 214 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vivi639g00008 214 MobiDBLite consensus disorder prediction 185 199 - -
Vivi639g00008 214 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi639g00008 214 Gene3D - 14 116 IPR036879 GO:0003677|GO:0046983
Vivi639g00008 214 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Vivi639g00008 214 PANTHER MADS BOX PROTEIN 3 153 - -
Vivi639g00008 214 MobiDBLite consensus disorder prediction 158 203 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi639g00008 1 202 Type I MADS-box Gene Family AT5G48670 48.039 6.62e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi639g00008 SRF-TF 5.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi639g00008 - - vvo:131640499 360.533