LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi639g00002	ATGACTACAAAAAAGCTGAAGCTTGCTTTCATTGAGAAGGATATCGCAAGGAAATTAGCATACAAGAATAGGAAGAATAGTTTAGTGAAGAAGGTTGAGGAACTTACAACCCTTTGCGGTATCGATGCATGTGCCATTATTTATGGCCCCTACGATCCTCAACCTGAGATCTGGCCATCGCCGTCCGGAGTACAAAATGTGATTTCGAAGTTCAAGACAGCGTCTGAGTATGAACAAAGGAAAAAGATGGTAAATCAAGAGAGTTTTCTGAAAGAAAGGATTTCGAAGGCAGAAAAGCAACTTAATAAGCAATGGAGGGACAACAAAGAAAAGGAGACAACAATGCTCATATTTCAATGTCTTAATGCTGGGGGGATCGTGCCAAACGACAGCTCGGTGGCTGGTTTGAATGATCTTGCTTTGATGATTGATAAGAATCTGATGGAGATTGGCAGAAGGATAGAAATAAGTGATAGCAACAGTAATATTCATCAGAGCCAAGGTGAAAATCAAATCACAACCGCTCAATTTGATCCTCCACTGCCACTACTACAACCACCACCGCCACCACCACCAACAGTGTCTGATGTTGATGAAGTTGAAATGATGAGTAGGTTGGGATGGCTATGA	630	0.4175	MTTKKLKLAFIEKDIARKLAYKNRKNSLVKKVEELTTLCGIDACAIIYGPYDPQPEIWPSPSGVQNVISKFKTASEYEQRKKMVNQESFLKERISKAEKQLNKQWRDNKEKETTMLIFQCLNAGGIVPNDSSVAGLNDLALMIDKNLMEIGRRIEISDSNSNIHQSQGENQITTAQFDPPLPLLQPPPPPPPTVSDVDEVEMMSRLGWL	209

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi639g00002	209	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	50	IPR002100	GO:0003677\|GO:0046983
	Vivi639g00002	209	Gene3D	-	14	99	IPR036879	GO:0003677\|GO:0046983
	Vivi639g00002	209	ProSiteProfiles	MADS-box domain profile.	1	49	IPR002100	GO:0003677\|GO:0046983
	Vivi639g00002	209	SUPERFAMILY	SRF-like	4	95	IPR036879	GO:0003677\|GO:0046983
	Vivi639g00002	209	MobiDBLite	consensus disorder prediction	176	197	-	-
	Vivi639g00002	209	MobiDBLite	consensus disorder prediction	180	195	-	-
	Vivi639g00002	209	FunFam	agamous-like MADS-box protein AGL80	13	97	-	-
	Vivi639g00002	209	Coils	Coil	80	100	-	-
	Vivi639g00002	209	CDD	MADS_SRF_like	2	85	IPR033897	GO:0000981\|GO:0000987\|GO:0045944
	Vivi639g00002	209	PANTHER	MADS BOX PROTEIN	4	119	-	-
	Vivi639g00002	209	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi639g00002	1	197	Type I MADS-box Gene Family	AT5G48670	47.475	4.31e-52	168

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Vivi639g00002		SRF-TF	1.7e-12	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi639g00002	-		-	vvo:131640499	309.301