Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi639g00001 ATGGGTAGAAAAAAGCTGAAACTTGCTTTCATTGAGAAGGATACCGCAAGAAAATTAGCATACAAGAATAGGAAGAATAGTTTACTGAAGAAGGTTGATGAACTTACAACCCTATGCGGGATCGACGCATGTGCCATAATTTTTGGCCCCTACGATCCTCAACCAGAGATCTGGCCATCACCGTCCGGAGTACAAAATGTGCTTTCGAAGTTCAAGACAGCATCTGAATTTGATCAAAGAAAAAAGATGGTGACTCAGGAGAGTTTTTTGAAACAAAGGGTTGAGAAGGCTGAAAAGCAACTTAGACAGCAATTGAGAGACAACAAAGAAAAAGAGACAACCATGCTCATGTTTCAATGTCTCAATGCTGGGGGGATGGTGCCGAACGACAGTTCGGTGGCTGGTTTGAATGATCTTGCATGGATGATTGATAAGAATCTGAAGGAGATTGGCAGAAAGATAGAATCAGGTGATAGCAACACTAATATTCCTCAAAATCAAAGTGAAAATCAAAGCCAAGAACAACTCCAAATGGATCCGCCACCGCCACTACTACCACCCCCGTCACCACCACCATCAGTGTCTGATAATGATGAAGTCGCAATGATGAGTAGGTTGGGATGGATATGA 630 0.4254 MGRKKLKLAFIEKDTARKLAYKNRKNSLLKKVDELTTLCGIDACAIIFGPYDPQPEIWPSPSGVQNVLSKFKTASEFDQRKKMVTQESFLKQRVEKAEKQLRQQLRDNKEKETTMLMFQCLNAGGMVPNDSSVAGLNDLAWMIDKNLKEIGRKIESGDSNTNIPQNQSENQSQEQLQMDPPPPLLPPPSPPPSVSDNDEVAMMSRLGWI 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi639g00001 209 MobiDBLite consensus disorder prediction 155 209 - -
Vivi639g00001 209 Coils Coil 80 114 - -
Vivi639g00001 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi639g00001 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Vivi639g00001 209 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Vivi639g00001 209 PANTHER MADS BOX PROTEIN 3 154 - -
Vivi639g00001 209 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vivi639g00001 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi639g00001 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi639g00001 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi639g00001 209 MobiDBLite consensus disorder prediction 179 194 - -
Vivi639g00001 209 MobiDBLite consensus disorder prediction 156 178 - -
Vivi639g00001 209 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi639g00001 209 Gene3D - 14 98 IPR036879 GO:0003677|GO:0046983
Vivi639g00001 209 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi639g00001 1 196 Type I MADS-box Gene Family AT5G48670 48.223 7.20e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi639g00001 SRF-TF 1.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi639g00001 - - vvo:131640499 326.25