Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi638g00017 ATGAACAATCTATTCACCAATTCATTCTCCCGCTTCCACAGCGAGGAAGTATCCTCGCCGGATCGCCACCACGTCATCGAGATGACAGACGCCGGAAGTCCCGGCACCGGCACCCGAGTAAACCTCGACAAATTCTTCGACGACGTCGAAGGCGTCAAAGACGATCTAAAAGAGCTCGAACAAATCTCACAAAAACTAAACAAGAGTCACGAACAGAGCAAAACGGTTCACGATGCTAAGGGAGTGAAAGAGCTACGTTCTCGTATGGACGAAGACGTTTCGGTGGCGTTGAAGAAAGCGAAGATGGTGAAGCTGAAATTGGAGGCGCTGGAACGATCTAATGCTGCGAACCGGAATTTGCCTGGGTGTGGACCGGGTTCGTCTTCAGACCGGACGAGGAGTTCTGTGGTCAACGGTTTGAAGAAGAAGCTTAGGGATTCTATGGAGACGTTTAACCGTCTCCGTGAAGTTATCTCTTCGGAATATAGAGAGACTGTTCAACGGCGTTACTTCACCGTTACCGGCGAGAATCCCGATGATAAGACGCTTGATCTGTTGATCTCCACTGGTGAGAGTGAGACTTTTCTTCAGAAAGCCATTCAAGAACAAGGCAGGGGGCAAATTATTGACACAATCAATGAGATTCAAGAGAGGCATGATGCTGTGAAAGAGTTGGAGAAGAATCTACTGGCGTTGCACCAAGTGTTTCTCGACATGACGGTATTGGTACAATTTCAAGGTGAGCAGTTGGATGATATTGAGAGCCATGTGGCAAGGGCGAGCTCGTTTGTGCATACTGGAACTGAACATTTAGTGACTGCAAGGAAGCACCAGAGAAACACAAGGAAATGGACCTGTTATCTGATTATACTTCTTCTGATCATTGTTTTGATTGTTGTTCTTGCCGTTGTGAAACCGTGGCAACATAATGGCGGCGGTGGGGATAGTCAGCCTGCTCCAGCGCAGACAACCCCATCTCCTCCCCCTCCTTCGCCTCCGGCTACTACTTAA 1011 0.4857 MNNLFTNSFSRFHSEEVSSPDRHHVIEMTDAGSPGTGTRVNLDKFFDDVEGVKDDLKELEQISQKLNKSHEQSKTVHDAKGVKELRSRMDEDVSVALKKAKMVKLKLEALERSNAANRNLPGCGPGSSSDRTRSSVVNGLKKKLRDSMETFNRLREVISSEYRETVQRRYFTVTGENPDDKTLDLLISTGESETFLQKAIQEQGRGQIIDTINEIQERHDAVKELEKNLLALHQVFLDMTVLVQFQGEQLDDIESHVARASSFVHTGTEHLVTARKHQRNTRKWTCYLIILLLIIVLIVVLAVVKPWQHNGGGGDSQPAPAQTTPSPPPPSPPATT 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi638g00017 336 CDD SNARE_syntaxin1-like 211 273 - -
Vivi638g00017 336 SMART SynN_4 37 163 IPR006011 GO:0016020
Vivi638g00017 336 MobiDBLite consensus disorder prediction 120 135 - -
Vivi638g00017 336 MobiDBLite consensus disorder prediction 321 336 - -
Vivi638g00017 336 ProSitePatterns Syntaxin / epimorphin family signature. 218 257 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vivi638g00017 336 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 39 169 - -
Vivi638g00017 336 SMART tSNARE_6 207 274 IPR000727 -
Vivi638g00017 336 Gene3D - 201 305 - -
Vivi638g00017 336 PANTHER SYNTAXIN 59 296 IPR045242 -
Vivi638g00017 336 MobiDBLite consensus disorder prediction 116 135 - -
Vivi638g00017 336 FunFam Syntaxin 132 205 305 - -
Vivi638g00017 336 Coils Coil 42 69 - -
Vivi638g00017 336 Pfam SNARE domain 248 300 IPR000727 -
Vivi638g00017 336 SUPERFAMILY t-snare proteins 41 267 IPR010989 GO:0016020|GO:0016192
Vivi638g00017 336 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 212 274 IPR000727 -
Vivi638g00017 336 CDD SynN 42 199 IPR006011 GO:0016020
Vivi638g00017 336 MobiDBLite consensus disorder prediction 310 336 - -
Vivi638g00017 336 Pfam Syntaxin 44 247 IPR006011 GO:0016020
Vivi638g00017 336 Gene3D - 40 172 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi638g00017 31 333 SNARE and Associated Proteins AT3G11820 70.684 8.32e-146 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi638g00017 K08486 - gmx:100809258 465.692