Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi636g00001 ATGTCCCACTTTGACTCTTCCTCACAAGACGATATCTCCCTTTTTCTCCATCAAATTCTCCTCCGTTCTTCTTCTTCTTCATCTTCCTCTTCTCATCTCATGCCTGGATCCATCCTCTCAAACCCACTTCACCATGCAAACATCTCACCCCTTCATCCCACCACCAGACCAAACCCCTCCGGAGGTGGAGGACTCAGTGGTAATGACACTGATGAATATGACTGTGAAAGTGAGGAGGGTGTTGAAGTATTGACAGAAGAAGCTCCAACAAAATCTGTACCTTCTAGGGGTTCTTCAAAGAGAAGTAGAGCAGCAGAAGTTCATAATTTGTCTGAGAAGAGAAGGAGGAGTAGGATCAATGAGAAAATGAAGGCTTTACAAAATCTAATACCTAATTCTAACAAGACTGATAAGGCTTCAATGCTGGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTTCAAGTACAGATGCTTTCGTTGAAAAATGGATTAAGTTTGCATCCTATGTGCTATCCCGAAGGATTGCAGCCTCTGTCATTGTCTCGGTTGAGTATGGAATTGAGTGACGGAAACCGGTCTAACCCTTTAAACATGACATCTACTCTGCCTCATCCCCAAGACAACAACCCTTTGCTCTATGGATCCAATCTTCCTAACAAAAACACATTGACAAGTCAGCCATCAATGTCCTCCTATCCTTCGTATGTTAACAACGCAGAAACTTCTTTCGCGGTGGAATCACGAATTCCGTCGCATAAAAGACCTCTTCAGCAAACTTCTGAGGCGGTACACGGTGAAGACATGTTGCAGAACCAGAACCAGCAGACAAACACAATCTATTCTGCTACCAATCTATTAGGTGGTTCTCAAGGTGTTGAAGAATTCGAGTCAGGCACGATGGTTGCACCTTCTATTAACAACTCTTTGCAAACATGCATAGCTGGAAGAGATCAGTCAGGTGTGATCATGAGAAGTAACGAGCCAAATGCTATATTCACATCGCAACTAAGTAACTAA 1020 0.4304 MSHFDSSSQDDISLFLHQILLRSSSSSSSSSHLMPGSILSNPLHHANISPLHPTTRPNPSGGGGLSGNDTDEYDCESEEGVEVLTEEAPTKSVPSRGSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSLKNGLSLHPMCYPEGLQPLSLSRLSMELSDGNRSNPLNMTSTLPHPQDNNPLLYGSNLPNKNTLTSQPSMSSYPSYVNNAETSFAVESRIPSHKRPLQQTSEAVHGEDMLQNQNQQTNTIYSATNLLGGSQGVEEFESGTMVAPSINNSLQTCIAGRDQSGVIMRSNEPNAIFTSQLSN 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi636g00001 339 MobiDBLite consensus disorder prediction 44 115 - -
Vivi636g00001 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 100 163 IPR036638 GO:0046983
Vivi636g00001 339 Pfam Helix-loop-helix DNA-binding domain 107 153 IPR011598 GO:0046983
Vivi636g00001 339 FunFam Basic helix-loop-helix transcription factor 98 161 - -
Vivi636g00001 339 CDD bHLH_AtPIF_like 103 165 IPR047265 -
Vivi636g00001 339 MobiDBLite consensus disorder prediction 101 115 - -
Vivi636g00001 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 103 152 IPR011598 GO:0046983
Vivi636g00001 339 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 7 284 IPR031066 -
Vivi636g00001 339 SMART finulus 109 158 IPR011598 GO:0046983
Vivi636g00001 339 Coils Coil 142 162 - -
Vivi636g00001 339 MobiDBLite consensus disorder prediction 44 65 - -
Vivi636g00001 339 Gene3D - 98 162 IPR036638 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi636g00001 68 257 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 52.083 4.40e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi636g00001 HLH 3.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi636g00001 - - vum:124831111 371.318