Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi630g00005 ATGATTCAATTGTTCCACCCTCCCTTTCGCTTTCTCACATTCCCATGCACAAAACCACCTCAATTAAATATTCACCTCCTCCTTTCCCTTCCCGCACCAACCATCCTTTGCTCATCACTCAACGATGGTTCCTTTTCCATCCCAAAATCAACCCAGTTTGGTTATAGTCCTCCAGAGGATCTCTTTGGACTTGAGATGGAATTCAAACCAAGGAAAGCGAACTCGCATACAAGAGAACCAAGGTCATGGTTTGGACCAAATGGACAATATATCAGAGAGCTACCTTGTCCGAGTTGTCGAGGAAGGGGTTATACTCCTTGTACAGAATGTGGAATTGAAAGATCTAGATCAGATTGTCCAAAATGTAATGGAAAGGGTTTATTGACTTGCCACCAGTGCTCTGGAGATTGTGTTATATGGGAAGAATCAATTGATGAAAGACCATGGGAGAGAGCTCAATCAATATCGCCACTCAAAGTGAAGGAAGACGATGAAGTTGACAAATTGGACATAAAGCTAGATGCAAAGAAAAAATCCAAACGTGTTTACAAGTCACCGTCTCCTGAAGTTGGATTGAAGATTAGCCGTTCTTTAAAAAGTCTCAATGCCAAAACTGGTCTATTTAGCAAACGAATGAAGATCATCCACCAGGATCCAGTTCTCGAGGCTCAAAGAGTGGATGCTATTAAGAAAGCCAAGAGAACTGTTTTAGCTAGAAAGCATGCTTCCAAAACTATGAAAGCATTCTTCAGCGATCCAATAAACCGTCAGAAAAGGAGCATCGCCATGAAAGGAGTGAAATTCTACTGTCAAAGCTGTGGACGCGAAGGACATAGGAGACACTACTGTCCAGAACTCAAGGATGGTTTGATTGAACGGCGATTCACTTGCAGGCTATGCGGCGAGAAAGGCCACAACAGAAGAACGTGCGATAAGTTAAGGATAAGCCATAGTGATGGGAGAGTTATAAAACATCATCGATGTAAAATATGTCGACAGTATGGCCATAACAGAAGGACATGTCCACAAGTTGTTTCAAATAAAAGAATAGGCAAGGCATCTCAAAGAGTATATATTTGTCGATTGTGCCAGGAAGAAGGACACAATATTAGGACATGTCCTAGAAGAATAGTTGATACTGAACATTCTCAAGAGTAA 1158 0.4162 MIQLFHPPFRFLTFPCTKPPQLNIHLLLSLPAPTILCSSLNDGSFSIPKSTQFGYSPPEDLFGLEMEFKPRKANSHTREPRSWFGPNGQYIRELPCPSCRGRGYTPCTECGIERSRSDCPKCNGKGLLTCHQCSGDCVIWEESIDERPWERAQSISPLKVKEDDEVDKLDIKLDAKKKSKRVYKSPSPEVGLKISRSLKSLNAKTGLFSKRMKIIHQDPVLEAQRVDAIKKAKRTVLARKHASKTMKAFFSDPINRQKRSIAMKGVKFYCQSCGREGHRRHYCPELKDGLIERRFTCRLCGEKGHNRRTCDKLRISHSDGRVIKHHRCKICRQYGHNRRTCPQVVSNKRIGKASQRVYICRLCQEEGHNIRTCPRRIVDTEHSQE 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi630g00005 385 SUPERFAMILY Retrovirus zinc finger-like domains 322 376 IPR036875 GO:0003676|GO:0008270
Vivi630g00005 385 Gene3D - 265 313 - -
Vivi630g00005 385 SUPERFAMILY Retrovirus zinc finger-like domains 267 313 IPR036875 GO:0003676|GO:0008270
Vivi630g00005 385 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 59 310 - -
Vivi630g00005 385 SMART c2hcfinal6 359 375 IPR001878 GO:0003676|GO:0008270
Vivi630g00005 385 SMART c2hcfinal6 296 312 IPR001878 GO:0003676|GO:0008270
Vivi630g00005 385 SMART c2hcfinal6 327 343 IPR001878 GO:0003676|GO:0008270
Vivi630g00005 385 SMART c2hcfinal6 269 285 IPR001878 GO:0003676|GO:0008270
Vivi630g00005 385 Pfam Zinc knuckle 358 374 IPR025829 -
Vivi630g00005 385 Gene3D - 323 382 - -
Vivi630g00005 385 ProSiteProfiles Zinc finger CCHC-type profile. 270 285 IPR001878 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi630g00005 41 383 C2H2 Transcription Factor Family AT5G20220 62.890 8.18e-157 446