Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi62g00003 ATGGAGAATTTGCGAAGACCTATTGATAGATCCAAAGAACCGATTTTGAAGCGACCCAGATTGATAAAAGATCCGCGAAATGCGGAATCGAGTGCTCCGATGTTTCCACAGAGACAACAGCAAGTTACTTCTGCTTCACGGTTCAGACAGAATGATAGAGACGTCGAAAATAATGATGATGGTTACCAGCCTCAGCCGCTGCCGTTTCAGGAGCTTGTGGCGCAGTATAAGAGTGGGCTTGCAGAGCTGACTTTCAATTCGAAACTGATAATTAACAACCTGACTAGAATTGCGGACGAAAATCGAGCTGCTGAGAAGGCTATTGCTGCTACTATATGTGCTAACATTCTAGAGGTTCCTAGTGAACAAAAGCTGCCATCTCTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTACATAAAATTCTTTGCTGCCAAACTACCCGAGGTGTTCTGCAAGGCATACAAACAGGTTGAACCTCCTGTCCGTCAAAGTATGAAACACCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGACCCTTCAGGCTATAGACAAAGAACTAGGCTTCACTCCAGCAGTCAATGGTTCGTCTTCAGCATCTGCTGCACTCAGGAGTGATTCACAGACACATCATCCATCTCACAGTATACATGTGAATCCCAAGTATTTTGAGAGACAGCGTGTTCAGGAGTCCAGCAGGAGTAATCAGCACACTCATAGAGACCCATTCAATGACCCTGTTCCAGAAAAGAGCATCAGTGCATCCTATGGAGGCGGTGAACATGGTTCCAATCTCTCAAGGAATATGGGCATGGGTATTGGCAGAACTGATGGCAGCATAACTGAGTTAGGACACCGCAATTTGTACAACAAAGCTGCTGGTGTTTCAGGGACCATATCTGGGCAAAGAAATGGTGTTGGCCTGAAGCATAGTTTTTCAAATACTGAAGCTACTACTATTTCGGATGCACAACATCAGCCAACACGAAACATAACTGGCATAAAGAGAAATGCAATGTCAAATAGCTGGAAAAATTCCGAGGAAGAGGAGTACATGTGGGATGACATGAACATTGGATTGACTAGTCATGGTGTCCGTAACAACTTGGGCAATGATGCTTGGACTGCTGATGATGAGAATTTGGACGCTGAAGAGAACCACCACCAAATCAGAAATGTTTTTGGGACAAATGTTGATAGAGAAATGACCAATAGATCTCAAGCCACTCAAAAGAAACAATTTCGGCATCATCCGTCGTTATCATGGAAATTGCAGGAGCATCAATCAATTGATGAATTGGATCAGGAATTGGGTCCCTCGGATGGATGTATGTCAATCTCTGGTTCCTTACTAGGCAATGCAAATTCTTCTGCTGCCAGGATGGGGAATCGTGCTTTCCTGCCCAATGCAAGAATTGGAGGACAACAGTTTCATTCTGTGGGATCTGAATCCATTTCAGGGCAGTCACCTTTGCGACAACGCTCTCCTTCGCCACCAAGTATCGACCACTCTCATCTAATAGAAAATTTCGATAAGCAAGACCATCCTCACAGTCGTAAAACATCTCAGTTTTTGGGAGGCCTGCAAAGCAAATATATTAAAGATTCTTCACCCACCCTTTCTCCTAATATTCAGGTTGGTGACTTGCGAAGATCATCACAGGTAAAAGACTTGCAGGGTCCATTACCTTCAGCGAGTTTTCAGCCAAGGTATCAGCAACAACTGAGCGCTTCTCCCACTGAAGTAAATGTTAAGACTAAGAAGCTACCCTTGTCCAATGTTTCTTTAGCCCGAGAAACCTCAGAGCAGCCAGCCACAAGTCATACAGAAATTGCAAGTGTGAAGAGTAGACTATTCTCCAACATGCCAATTACTAGTAATCTTCCATCTCTATTAGGGTCTCGGCCTTCTCAGTCAGGCGGTTCTTCCCCTGCCACATTAATTTCTTCAGTGTCTGCCAATGCTTCTCCATCTTCATCTGCTTTGCCAAAAAGACCTCAAAGAAAGGCTGGACAATCAATAAGGACATCTACTCTACCACCAGCTTCCTCGAATGTTAGCAGTGCCTCAGCCCAGACATTGGATGCTACAAATAAAACCTCAAATCCACTTTCAAACCTTTTAAGCTCATTAGTTGCAAAGGGTTTGATATCCACAGAAACTGAGACACCAGCTGAGGTGGTGTCTCGATCGGAAGATTACTGCGACAGCTTTAGTACCAGTAGCTCTATGCCTGTTGCTTCATTGTCTGGTTCTGCAGTTGTCCCTGTCCCTTCTACTAAAGATGAGTTAGATGATACTGCAAAAACATCTACGTCCTTATCTGAATCAACCAGCACAGATATTAGAAATGTCATTGGCTTTGAGTTTAAGCCTAATGTAATCAGAAAATTGCATCCATCTGTAATTAGTGGATTATTTGATGATTTTCCACATCATTGCAGCATTTGTGGCCTTAAGCTCAAACTCCAAGAGCAGTTTAATAGACACTTGGAGTGGCACGCCACAAGAGAAAGAGAACACAGTGGTTTAACTAAAGCATCAAGATGGTATCTGAAGTCAACTGACTGGGTTGCTGGCCAAGCTGAATGTTCATCTGAAAATGAGTTTACTGACTCTGTAGATTCACAAGACAAGGAAACAGACGAAAGTCAAGAGGATGCAATGGTTCTGGCAGATGAAAACCAGTGCTTATGTGTGCTATGTGGCGAGTTATTTGAAGATGTTTACTGTCAGGAAAATAGTGAGTGGATGTTCAAAGGGGCTGTTTACGTGACTAATTCAGATAGCGATACTGAGACGGGAATCAAAGATACGAGTTCTGGAAGGGGTCCTATCATTCACACAAGATGCTTATCAGATAACTCGTTATCGAGTGTCCTCAAGATGGAACAAGATTGA 2916 0.4331 MENLRRPIDRSKEPILKRPRLIKDPRNAESSAPMFPQRQQQVTSASRFRQNDRDVENNDDGYQPQPLPFQELVAQYKSGLAELTFNSKLIINNLTRIADENRAAEKAIAATICANILEVPSEQKLPSLYLLDSIVKNIGRDYIKFFAAKLPEVFCKAYKQVEPPVRQSMKHLFGTWKGVFPPQTLQAIDKELGFTPAVNGSSSASAALRSDSQTHHPSHSIHVNPKYFERQRVQESSRSNQHTHRDPFNDPVPEKSISASYGGGEHGSNLSRNMGMGIGRTDGSITELGHRNLYNKAAGVSGTISGQRNGVGLKHSFSNTEATTISDAQHQPTRNITGIKRNAMSNSWKNSEEEEYMWDDMNIGLTSHGVRNNLGNDAWTADDENLDAEENHHQIRNVFGTNVDREMTNRSQATQKKQFRHHPSLSWKLQEHQSIDELDQELGPSDGCMSISGSLLGNANSSAARMGNRAFLPNARIGGQQFHSVGSESISGQSPLRQRSPSPPSIDHSHLIENFDKQDHPHSRKTSQFLGGLQSKYIKDSSPTLSPNIQVGDLRRSSQVKDLQGPLPSASFQPRYQQQLSASPTEVNVKTKKLPLSNVSLARETSEQPATSHTEIASVKSRLFSNMPITSNLPSLLGSRPSQSGGSSPATLISSVSANASPSSSALPKRPQRKAGQSIRTSTLPPASSNVSSASAQTLDATNKTSNPLSNLLSSLVAKGLISTETETPAEVVSRSEDYCDSFSTSSSMPVASLSGSAVVPVPSTKDELDDTAKTSTSLSESTSTDIRNVIGFEFKPNVIRKLHPSVISGLFDDFPHHCSICGLKLKLQEQFNRHLEWHATREREHSGLTKASRWYLKSTDWVAGQAECSSENEFTDSVDSQDKETDESQEDAMVLADENQCLCVLCGELFEDVYCQENSEWMFKGAVYVTNSDSDTETGIKDTSSGRGPIIHTRCLSDNSLSSVLKMEQD 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi62g00003 971 MobiDBLite consensus disorder prediction 485 507 - -
Vivi62g00003 971 ProSiteProfiles CID domain profile. 68 196 IPR006569 -
Vivi62g00003 971 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 44 964 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Vivi62g00003 971 MobiDBLite consensus disorder prediction 204 271 - -
Vivi62g00003 971 FunFam polyadenylation and cleavage factor homolog 4 65 193 - -
Vivi62g00003 971 MobiDBLite consensus disorder prediction 1 64 - -
Vivi62g00003 971 MobiDBLite consensus disorder prediction 877 891 - -
Vivi62g00003 971 MobiDBLite consensus disorder prediction 222 251 - -
Vivi62g00003 971 SMART 558neu5 71 193 IPR006569 -
Vivi62g00003 971 MobiDBLite consensus disorder prediction 762 781 - -
Vivi62g00003 971 MobiDBLite consensus disorder prediction 525 589 - -
Vivi62g00003 971 Gene3D - 68 193 IPR008942 -
Vivi62g00003 971 MobiDBLite consensus disorder prediction 510 524 - -
Vivi62g00003 971 MobiDBLite consensus disorder prediction 869 891 - -
Vivi62g00003 971 CDD CID_Pcf11 73 189 IPR047415 -
Vivi62g00003 971 MobiDBLite consensus disorder prediction 204 220 - -
Vivi62g00003 971 ProSitePatterns Zinc finger C2H2 type domain signature. 819 839 IPR013087 -
Vivi62g00003 971 MobiDBLite consensus disorder prediction 485 589 - -
Vivi62g00003 971 Pfam CID domain 79 187 IPR006569 -
Vivi62g00003 971 MobiDBLite consensus disorder prediction 634 705 - -
Vivi62g00003 971 MobiDBLite consensus disorder prediction 32 48 - -
Vivi62g00003 971 SUPERFAMILY ENTH/VHS domain 71 193 IPR008942 -
Vivi62g00003 971 MobiDBLite consensus disorder prediction 1 25 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi62g00003 791 956 C2H2 Transcription Factor Family AT4G04885 35.882 5.88e-31 129