Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi628g00019 ATGAGTAACCGACGAAGAAAGACGAACTTGTTGTTAGATCTGGATAACATTTCATCTGAAGAGTCTTCACCCGGTGAAGGGCTTTCTGAGACTATTCATGTTCCCATAAATTATCTCGAAGAAACTGATGATGATGTTGTTGAATGTTCACCTCGAGCTTTTGCCCAGGCTGTGGCCAATGCAAGAAGAACTCGTAGGAGGGTTACAATTGACTTGAGTTTGGAATGTCAACCTATGCCAACACCTGTTATGCACTATAGACAGAACATAGAAAATCCAACTATGCCATCAGAGAACATTGTGAATCCAACTATCACAACATCTGTTATGCATTACACAGAGAACATAACTGGACCTATTGGTCAAAATAATATAAATTTGGGAGCCATCATCAATGAAGCTGAAAATGACAAACGAACACCAGAAACTAACAAGGAAGTTTCTAAGCCTAAGATTCCAGAAATTGAACCTCCAAAAGAGACTGCACCTCTTAATGAGCCTATCTTAAACTGCCCAATATGTATGGAAGGTTTTGTTGAGGAAATGTCAACAACATGCGGCCATATTTTTTGCAAGACTTGCATCAAAAGAGCAATATCAAGACAGCGAAAATGCCCTACATGCAGAAAAAATCTTGCTTCTAGAGGGCTAAGAAGGGTGTTTCTTCCATCTTCCAATTGA 681 0.395 MSNRRRKTNLLLDLDNISSEESSPGEGLSETIHVPINYLEETDDDVVECSPRAFAQAVANARRTRRRVTIDLSLECQPMPTPVMHYRQNIENPTMPSENIVNPTITTSVMHYTENITGPIGQNNINLGAIINEAENDKRTPETNKEVSKPKIPEIEPPKETAPLNEPILNCPICMEGFVEEMSTTCGHIFCKTCIKRAISRQRKCPTCRKNLASRGLRRVFLPSSN 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi628g00019 226 SMART ring_2 171 208 IPR001841 -
Vivi628g00019 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 222 IPR013083 -
Vivi628g00019 226 Pfam Zinc finger, C3HC4 type (RING finger) 170 208 - -
Vivi628g00019 226 MobiDBLite consensus disorder prediction 136 156 - -
Vivi628g00019 226 MobiDBLite consensus disorder prediction 136 161 - -
Vivi628g00019 226 ProSiteProfiles Zinc finger RING-type profile. 171 209 IPR001841 -
Vivi628g00019 226 ProSitePatterns Zinc finger RING-type signature. 186 195 IPR017907 -
Vivi628g00019 226 PANTHER ELFLESS, ISOFORM B 3 225 - -
Vivi628g00019 226 SUPERFAMILY RING/U-box 170 213 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi628g00019 3 225 C3H Transcription Factor Family AT5G48655 32.479 4.91e-25 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi628g00019 K22651 - psat:127092874 254.603