Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi628g00018 | ATGAGTAATCGACAAAGAAAGAGGAATTTATTGTTAGATCTGAACAACATTGCATTAGACGAGTCTTCGCACGATGAAGGGGCCTCTGAGTCTATATATGTTCCCATAAATTATCTCGAGGAAATTGACGACGATGTTGTTGAATGTTCACCTCGAGATTTTGCTCAGGCCGTGGCGAATGCAGGGAGAACTCGTAAAAGAATTGCAATTGACTTGAATTTGGAATATCAACCTATGCCAACACCTGTTGAAAATTATAGAGAGAACATGGAAAATTCAACTCTTCCATCAGAGAACATAGAGAATCCAACTATCCCAACACCTGTTATGAACTATACAGAGAACATAACTGAACCAATTGGTCAAAGTAATATAAATTTGGAAGTCATCATCAATGAAGTTACTGAAAATGACAAAACGTCACCAGAAGCTAACAAGGAAGAAGCTAACAAGGAAGTATCTGACCCTAATATTCAAGTTGTTGAACCTCCAAAAGAGCCTGAACCTCCAAAAGATCTTATCTTAACCTGCCCCATATGTATGGAAGCTTTTGTTGAGGCAATGTCAACTGTGTGTGGCCATATCTTTTGCAAGATTTGCATTAAAAAAGCAATATCAAGACAAAAAAAATGTCCTACATGTAGAAAAAAGCTTACATGTAGAGGGCTAAGAAGGGTGTTTATTCCATCTTCTAGTTGA | 699 | 0.3748 | MSNRQRKRNLLLDLNNIALDESSHDEGASESIYVPINYLEEIDDDVVECSPRDFAQAVANAGRTRKRIAIDLNLEYQPMPTPVENYRENMENSTLPSENIENPTIPTPVMNYTENITEPIGQSNINLEVIINEVTENDKTSPEANKEEANKEVSDPNIQVVEPPKEPEPPKDLILTCPICMEAFVEAMSTVCGHIFCKICIKKAISRQKKCPTCRKKLTCRGLRRVFIPSSS | 232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi628g00018 | 232 | SMART | ring_2 | 177 | 214 | IPR001841 | - | |
| Vivi628g00018 | 232 | SUPERFAMILY | RING/U-box | 176 | 220 | - | - | |
| Vivi628g00018 | 232 | ProSiteProfiles | Zinc finger RING-type profile. | 177 | 215 | IPR001841 | - | |
| Vivi628g00018 | 232 | MobiDBLite | consensus disorder prediction | 139 | 153 | - | - | |
| Vivi628g00018 | 232 | Pfam | Zinc finger, C3HC4 type (RING finger) | 177 | 214 | - | - | |
| Vivi628g00018 | 232 | ProSitePatterns | Zinc finger RING-type signature. | 192 | 201 | IPR017907 | - | |
| Vivi628g00018 | 232 | MobiDBLite | consensus disorder prediction | 134 | 167 | - | - | |
| Vivi628g00018 | 232 | PANTHER | ELFLESS, ISOFORM B | 3 | 231 | - | - | |
| Vivi628g00018 | 232 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 123 | 228 | IPR013083 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi628g00018 | 6 | 231 | C3H Transcription Factor Family | AT5G48655 | 33.193 | 4.19e-24 | 93.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi628g00018 | K22651 | - | psat:127092874 | 260.766 |