Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi628g00001 ATGGCCATTCGCCATCCTCGATTTTTCAAGGTCATGCAGAATCACAAAGAGGAGATTAGACTTCCGAAGAAATTCGTGGAGAAATATTGGAAAGGAATTTCAAATCCGGTGTTACTTATTCTACCAAATGGAGTTGAACACAAAGTATTTTGGATTGAACGTGACGGTGATATTTGGTTTCAAAAGAACTGGGAAAAACTTGCAAAATTTTTAAAATGTAATTATTTTTTAACTTTTAAATTTATATGTGAATCACATTTTAAGGTTAAAATATATGACACAACCACTTTAGAAATAGATTATTCCCATATAAAATTTGTAAGTGAAGTTGATGAAGGTGTAAAAGAAGCTGAAGACGTTATTGAAGTGAGTGACAATAGGGATAAGAGTTTAGATGAGAGTGAACCATCCAAGCATGTTCAAATGAAAAAAGTTAATGGCAAGAGAAAAAGTATGGATTTTGATCCTACACATGAAAAAATTTCAGGTACTAGCATAGGAAGCATGACGGAGATGTCTAAAGAGTGTCAAACAACCGAAGCTATGAATGAGAACCCAAGGTTTGAAGTTAAATTGACACCATCTTCTATCCAAAACTATAGATTGAGGATACCAACTGATTTTTCTAGGGAATACTTGAACAAGTTCAATGGTACGACAACTATGAGAGTCGGTGAAGACGGAACTATGAAAGTTAAAATCAAGTTTGATGATATCTATAGTCGATCTATTGTGAGTGGCGGTTGGACAAGGATTGTTAAAAAGTATAAATTGCATGTTAATGATGTTTGTATATTTGAGATGATTCAACTCCAACCACCTTCCTTCGTTATTACTATTATTCGAGGAGAAGAAGATCCAAGCTCGAAGAAGTTGAAAGGTTACAAAGAAGGAAAATCTTGTGATAATATTGCAAAGAGAAAAGACATTCCAGAAACTTCTAGGAGCTGTCCAAAGTTACATGTTCTGGATGATTTAGAAGACAATAGTGTGACTAAAAAGAATATATTTGAAGTTGTTGTCAATTCATCATACCCGTGTGTACCAAATGCGTTTATGAATAGACATGTTGGATGTCATGGAAAATTCTTGGAGTTGAAAGTGGAAGAAAAATCTTGGTTTGTGAAACTGAGTTATTATCCCACACACAGTACATTGTATGCAGGTTGGAGAAAATTTAGGAAAGAATGCAAATTGGAGGCAGGAGATATTTGTTTCTTTGAGTTGGTCGATGAGAACAAATGTGTGTTTAAGGTTTCATTTGAAAGGAACAACCTAGGAGAAGATGTTAGATCTGTTTGA 1302 0.3425 MAIRHPRFFKVMQNHKEEIRLPKKFVEKYWKGISNPVLLILPNGVEHKVFWIERDGDIWFQKNWEKLAKFLKCNYFLTFKFICESHFKVKIYDTTTLEIDYSHIKFVSEVDEGVKEAEDVIEVSDNRDKSLDESEPSKHVQMKKVNGKRKSMDFDPTHEKISGTSIGSMTEMSKECQTTEAMNENPRFEVKLTPSSIQNYRLRIPTDFSREYLNKFNGTTTMRVGEDGTMKVKIKFDDIYSRSIVSGGWTRIVKKYKLHVNDVCIFEMIQLQPPSFVITIIRGEEDPSSKKLKGYKEGKSCDNIAKRKDIPETSRSCPKLHVLDDLEDNSVTKKNIFEVVVNSSYPCVPNAFMNRHVGCHGKFLELKVEEKSWFVKLSYYPTHSTLYAGWRKFRKECKLEAGDICFFELVDENKCVFKVSFERNNLGEDVRSV 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi628g00001 433 ProSiteProfiles B3 DNA-binding domain profile. 331 425 IPR003340 GO:0003677
Vivi628g00001 433 CDD B3_DNA 6 93 IPR003340 GO:0003677
Vivi628g00001 433 PANTHER B3 DOMAIN-CONTAINING 331 420 - -
Vivi628g00001 433 ProSiteProfiles B3 DNA-binding domain profile. 187 284 IPR003340 GO:0003677
Vivi628g00001 433 SUPERFAMILY DNA-binding pseudobarrel domain 341 421 IPR015300 -
Vivi628g00001 433 Gene3D - 324 425 IPR015300 -
Vivi628g00001 433 Gene3D - 168 285 IPR015300 -
Vivi628g00001 433 SUPERFAMILY DNA-binding pseudobarrel domain 4 94 IPR015300 -
Vivi628g00001 433 MobiDBLite consensus disorder prediction 125 181 - -
Vivi628g00001 433 SUPERFAMILY DNA-binding pseudobarrel domain 184 285 IPR015300 -
Vivi628g00001 433 MobiDBLite consensus disorder prediction 161 181 - -
Vivi628g00001 433 Gene3D - 2 96 IPR015300 -
Vivi628g00001 433 CDD B3_DNA 186 282 IPR003340 GO:0003677
Vivi628g00001 433 SMART B3_2 337 423 IPR003340 GO:0003677
Vivi628g00001 433 SMART B3_2 8 95 IPR003340 GO:0003677
Vivi628g00001 433 SMART B3_2 188 284 IPR003340 GO:0003677
Vivi628g00001 433 CDD B3_DNA 340 423 IPR003340 GO:0003677
Vivi628g00001 433 Pfam B3 DNA binding domain 190 282 IPR003340 GO:0003677
Vivi628g00001 433 Pfam B3 DNA binding domain 346 419 IPR003340 GO:0003677
Vivi628g00001 433 MobiDBLite consensus disorder prediction 125 157 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi628g00001 305 430 B3 DNA Binding Superfamily AT3G18990 29.452 8.07e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi628g00001 B3 5e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi628g00001 - - vvo:131638755 850.892