Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi625g00012 ATGAACCGAAAACCTCTCTTCTTCCATTTCTCTTCTCCTCTCATTTATTCATACTGCATCACCATCTTCTATTTCCTCACCACAACCACTCTAAGCTATGGTGGGGATCCAAAATTTGAAGCTTGTGAACCTAAAACATGTGGAAACCAAACTATAAGCTACCCTTTCTACATCAAAGGAATACAAGAATCCTTTTGTGGCTACCCTGGTTTTGGTGTCACTTGTGACAATACTATTGGTTTTCCAATCCTTAATCTTTCTAACACCTTGTACACAATCAACCAAATTTTCTATCAGAATCATTCATTCAGAGCGTCTAATGCTATTTTTTCAAGACCAGACACAAAAAAAGGTTGTCTTTTATTTCCACCTACCCAAAACCTCAGTTTTCCAACTAACTTGTTCTATCTTGCACAAAATCAAACCGAGGTAAGACTATTCTTCGGGTGCGACCTACCCATAACTCTGCAAAGGAACAAAATCGGTTGCTCTGCAGAAAACAAAACGAGTTCGGTTGTGGCATTGTATGCGGGTGATAAAAATGTAAGCTTTGTGTCGAAGAATTGTAAGGATGAAGTGGTATATGCGAGGGTGGAAAATGGTGTGGAAGGAGGAATTCGAGAAGCTCTGAGAAATGGGTTTCGATTGAATTGGATTGCCGGTGATTGCAGGGAATGTAACAGTACTGGAGGGAGATGTGGGTTTGATGCAGATGCATACGCTTTCAGATGTTACTGCGCCGATAGAGTTCATGCACGAAAATGTGATCCAGCTACGAATGCAAAGAGCAGGCGGAGGCGGAATGTTAAGCTGGGTATAGGTTTGGGTATTGGAGTCCTGGGTATCTTGTTCATCGGGTTGATGTGTCTCCTACTCTACAAACGAAAACATGCTATCTCTGTTGGACACTTCCAATCTAGTAACTCTTATTCTGATTCGTCCATAAATCCACGCAGAGAAATTGTTAGTAAACACTTTGGAGTTCCATTATTCTCCTACGACGAGCTTAGAAAAGCAACAAACAATTTCGACCATACTAAAGAACTTGGAGATGGAGGATTCGGTACTGTCTACTTTGGGAAACTTCCCGATGGACGTGAAGTTGCTGTCAAACGTTTATACGAACACAACTATAGAAGAGTAGAACAGTTTATGAATGAAGTTAATATCCTGACAACATTGCGACATAAAAATCTCGTGTCCCTCTATGGCTGCACATCACGGCACAGCCGTGAACTACTGCTTGTGTACGAATATATCTCAAATGGCACCATCGCAAGTCATCTCCATGGTGAATTGGCCAAGCCAAATTTACTACCATGGTCGATCCGAATAAAAATTGCCATAGAGACTGCTACTGCCTTGACTTATCTCCATGCTTCTGGTATCATCCACCGTGATGTGAAAACCAGTAACATACTCCTTGACGACAATTTTCGTGTTAAAGTTGCAGATTTTGGCCTTTCAAGATTATTCCCTGAGGATGCCACTCATGTTTCCACAGCTCCACAAGGGACACCGGGTTACCTTGATCCCGAGTATCACCAATTTTATCAGCTTACTAGCAAGAGTGATGTATATAGTTTCGGAGTTGTGCTAATTGAGCTTATATCATCTAAGCCTGCTGTTGATATTAACAGAAGTAGAGAAGAGATTAACTTGTCCACTCTAGCAACAAAAAAGATTCAAGAAAGTGCAATTGATGAGCTGGTAGATCCCAGTCTTGGTTTTCATTTAGACAATGAGGTTAATAGCATGATAGTTTCAGTGGCAGAATTGGCATTTCAATGTTTGCAAAGGGACAAGGAGATGAGACCTTCTATGGAAGAAGTGTTAGATGAACTTAGGAGAATAGAGAGTGGGAGGGATGTGGTTGAGGTTGTAGACGAAGCAGATGTTGATGGTGTTGGATCTTCACACGGTAATGTAAATCCACCACCAACCTCACCTGAATGGGATGAAGTTGGATTATTGAAGAATATGAAAAATATGAAGCACCCGTCTTCACCAAACACGGTCACTGATAAATGGGAAAGTATTAGTACTACACCTAATGCCAGTGCTTAA 2067 0.4117 MNRKPLFFHFSSPLIYSYCITIFYFLTTTTLSYGGDPKFEACEPKTCGNQTISYPFYIKGIQESFCGYPGFGVTCDNTIGFPILNLSNTLYTINQIFYQNHSFRASNAIFSRPDTKKGCLLFPPTQNLSFPTNLFYLAQNQTEVRLFFGCDLPITLQRNKIGCSAENKTSSVVALYAGDKNVSFVSKNCKDEVVYARVENGVEGGIREALRNGFRLNWIAGDCRECNSTGGRCGFDADAYAFRCYCADRVHARKCDPATNAKSRRRRNVKLGIGLGIGVLGILFIGLMCLLLYKRKHAISVGHFQSSNSYSDSSINPRREIVSKHFGVPLFSYDELRKATNNFDHTKELGDGGFGTVYFGKLPDGREVAVKRLYEHNYRRVEQFMNEVNILTTLRHKNLVSLYGCTSRHSRELLLVYEYISNGTIASHLHGELAKPNLLPWSIRIKIAIETATALTYLHASGIIHRDVKTSNILLDDNFRVKVADFGLSRLFPEDATHVSTAPQGTPGYLDPEYHQFYQLTSKSDVYSFGVVLIELISSKPAVDINRSREEINLSTLATKKIQESAIDELVDPSLGFHLDNEVNSMIVSVAELAFQCLQRDKEMRPSMEEVLDELRRIESGRDVVEVVDEADVDGVGSSHGNVNPPPTSPEWDEVGLLKNMKNMKHPSSPNTVTDKWESISTTPNASA 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi625g00012 688 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 22 682 IPR044652 GO:0004672
Vivi625g00012 688 Pfam Protein kinase domain 345 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi625g00012 688 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 316 419 - -
Vivi625g00012 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Vivi625g00012 688 Pfam Wall-associated receptor kinase galacturonan-binding 42 105 IPR025287 GO:0030247
Vivi625g00012 688 MobiDBLite consensus disorder prediction 664 688 - -
Vivi625g00012 688 Gene3D Transferase(Phosphotransferase) domain 1 420 630 - -
Vivi625g00012 688 Pfam Wall-associated receptor kinase C-terminal 169 248 IPR032872 -
Vivi625g00012 688 ProSiteProfiles Protein kinase domain profile. 343 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi625g00012 688 CDD STKc_IRAK 349 618 - -
Vivi625g00012 688 Gene3D Phosphorylase Kinase; domain 1 315 419 - -
Vivi625g00012 688 SUPERFAMILY Protein kinase-like (PK-like) 319 615 IPR011009 -
Vivi625g00012 688 SMART serkin_6 343 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi625g00012 688 ProSitePatterns Protein kinases ATP-binding region signature. 349 371 IPR017441 GO:0005524
Vivi625g00012 688 FunFam Wall-associated receptor kinase-like 20 420 627 - -
Vivi625g00012 688 MobiDBLite consensus disorder prediction 634 688 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi625g00012 38 688 Receptor kinase-like Gene Family AT1G25390 44.597 3.07e-165 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vivi625g00012 Pkinase 4.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi625g00012 - - psat:127098518 1219.53