Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi625g00011 ATGACTCTTGTTCATTTGTTCTGCTTCCTCTTGTTTTGTCACCTCGTGTTGATTTTATCAGAAGGGTATGGAAGTGGGTACCAGGATAACTGTCCACACTCATTCAGCTGTGGAATTCGTGGGAATTTTAGTTATCCTTTCACCAAGGCAGAGAAACCAGACTGCGGCCTCATACTCATACATAGCTGTGACGCCGGTTACTATTCACCCAAATTGATCCAACTGGAGGAGAATGCAAGAACCACAGAGCTAACTGGCTCCATTGACCAGAATACCATTACACTTTCTGATCAAGATTTTTACAAGCATTTACAAAATAATGCTTGTGATGCTTTGAACCACAACTACACTCTTCCTCCCCCTTCTCCTTTGGTTTCCTTTTATATAATTTATAATGTAACTTTCTTCCGATGCAACCATGGCCACAAAATCAACCCCCCTGCACATTATTTTAAACACAACTGTTCATCCTATGATATATATTATGACAGCAACCAATACCCCAATGTTACTATAGAGATGGCACGTAGCTTTTTCCCATCCTGCATGGTTCTTCAGTTTCCATCTAAAGACTTGACTGATACCAAAAACATTTTATCATTTGTATCTGGTCAGGTGAGTGTTAAAATAGAACTATCTGCTGATTGTGACAAGTGCTGCAACCACGGAGGAGGACAATGTCGACTTGATGCAAGCAAGAAGTTTTACTGTCATAATGAGCCGGAGAATAAGAGAGATTATTTTAAGCTTCTACTTGGACTTGGAATAGGTTTAGGTATTACATTGGTTGCACTGGGTATTCTTATAGTTCGATGCCACTCCAAAAGAAAACATGCTCCATCAGACCTCCAGAATCAATCGAGAATAAAATCATACAATGATGAAATTGATCCCTACCGAAATCAAGACTCAGAAAACGGCACTGTCTACTTTAAAATACCTCTGTTCTCTTATAAGGAGCTAGAAGAAGCTACAAATAATTTCCACCAAGCCAACCAACTTGGAAGTGGAGGCTTTGGAATAGTTTATTATGGGAGACTGCAAGATGGACGTGAAGTTGCTGTTAAGCGCCTATACCAACATAACTGGAGGCGAGTAGAACAGTTCACAAACGAAATTGAGATCCTTGCTCGTACTCGCCACGCTAATCTTGTGTCCCTCTATGGTTGTACTTCACATCACAGCGATGAACTACTGCTAGTGTACGAATATGTTCCAAACCACACTGTTGATTTTCATCTCCAAGGTGATCTAGCAAGAACAGCCACACTGCCTTGGCATATCAGGATGAAAATTGCCATAGAGACAGCAAGTTCATTGGCTTATCTGCATGCTTCAGGCATAATCCACCGTGACGTGAAAACCAAAAACCTTCTCCTTACAAACAGCTTCAGTGTAAAAGTTGCAGATTTTGGTCTTTCAAGGCTATTCCCCCATGATATCACCCATGCTTCCACGGCACCACAAGGGACACCAGGTTATGTTGACCCGGACTATCATCAATGCTACCAGCTTACTAACAAGAGTGATGTATATAGTTTTGGTGTTGTGCTCGTCGAGCTTATATCATCTAAGCTTGCTGTCGATATGAACAGGCATAAGGATGAGATTAACTTATCAAACCTGGCCTTAAAGAAGATCCAGAAGGGTGAATTTACTGAGCTGGTGGATCCTAATCTTGGTTTTGATTCAGACAATGAGGTTAAGAGGATGATAGTTTCGGTAGCAGAGTTGGCTTTTCAATGTTTGCAAAGGGAAAAGGAATTAAGACCTTCCATGGATGAGGTTTTGAAGGTGCTGATGAGAATTGAAAGTGGAAAGGATGAGCCTGAGCATATAGTTGAAGAAGAGGTGCATCCATCCTCACCAGAAGGAAATGAGGATGAGATTGGACTTTTCCAAAAAACAATGCGACAGCCTTCGCCTAAAACTGTGGTTGATGAATGGGATAGTCGATCTACTACGTCAAATACCATCAGCGGTCATTAA 1989 0.4128 MTLVHLFCFLLFCHLVLILSEGYGSGYQDNCPHSFSCGIRGNFSYPFTKAEKPDCGLILIHSCDAGYYSPKLIQLEENARTTELTGSIDQNTITLSDQDFYKHLQNNACDALNHNYTLPPPSPLVSFYIIYNVTFFRCNHGHKINPPAHYFKHNCSSYDIYYDSNQYPNVTIEMARSFFPSCMVLQFPSKDLTDTKNILSFVSGQVSVKIELSADCDKCCNHGGGQCRLDASKKFYCHNEPENKRDYFKLLLGLGIGLGITLVALGILIVRCHSKRKHAPSDLQNQSRIKSYNDEIDPYRNQDSENGTVYFKIPLFSYKELEEATNNFHQANQLGSGGFGIVYYGRLQDGREVAVKRLYQHNWRRVEQFTNEIEILARTRHANLVSLYGCTSHHSDELLLVYEYVPNHTVDFHLQGDLARTATLPWHIRMKIAIETASSLAYLHASGIIHRDVKTKNLLLTNSFSVKVADFGLSRLFPHDITHASTAPQGTPGYVDPDYHQCYQLTNKSDVYSFGVVLVELISSKLAVDMNRHKDEINLSNLALKKIQKGEFTELVDPNLGFDSDNEVKRMIVSVAELAFQCLQREKELRPSMDEVLKVLMRIESGKDEPEHIVEEEVHPSSPEGNEDEIGLFQKTMRQPSPKTVVDEWDSRSTTSNTISGH 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi625g00011 662 Gene3D Transferase(Phosphotransferase) domain 1 406 614 - -
Vivi625g00011 662 Gene3D Phosphorylase Kinase; domain 1 299 404 - -
Vivi625g00011 662 FunFam receptor-like protein kinase FERONIA 292 404 - -
Vivi625g00011 662 MobiDBLite consensus disorder prediction 637 662 - -
Vivi625g00011 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Vivi625g00011 662 MobiDBLite consensus disorder prediction 608 624 - -
Vivi625g00011 662 ProSiteProfiles Protein kinase domain profile. 328 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi625g00011 662 Pfam Protein kinase domain 328 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi625g00011 662 FunFam Wall-associated receptor kinase-like 20 405 612 - -
Vivi625g00011 662 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Vivi625g00011 662 MobiDBLite consensus disorder prediction 608 662 - -
Vivi625g00011 662 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 6 654 IPR044652 GO:0004672
Vivi625g00011 662 SUPERFAMILY Protein kinase-like (PK-like) 307 601 IPR011009 -
Vivi625g00011 662 SMART serkin_6 328 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi625g00011 35 658 Receptor kinase-like Gene Family AT1G25390 46.238 5.26e-163 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vivi625g00011 Pkinase 4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi625g00011 - - psat:127098519 1158.67