Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi625g00006 ATGACCTCCCTTTTCATTTTCAAATCATTAATATTCTTCCAGTTTCTACTTGTTTCAGCTCAAGATCATGAAACATGTCCAACTGCTTTTAGTTGTGGATATCTTGGCCAGATCACTTTTCCTTTCACAGTCCCACAACGCCCTCACTGTGGCGCTTTGGCCATACATAACTGTGAGAATGCAACTGCTCCCAAAACCATCCAACTAGGCAGTCCACCATCAAAACAGTTTTTTACTGTTCCATACGTGGAAGGTGATACCATCACAGTCAGGGAAAATGAAGCTCAACGGAAGACTTTGCGATCCAAAAATTGTCAAGCCATTCGCAATTTTCCTGTTCCTCCCACTTCTCCTTTAGCTTCTTTCTACATCAAATATAATATAACTATGTTCAAATGCAATCACTCCCTTAGTGTAATCCCTCCCAAATCATTTCAAAACTACAAAAACTGTTCCGGTTATAATATCTACTATTATTACCTTCAAAACTCTAGTGGTAATTTCACAGTGCCAAGTTCTTTGGCACGGTGTAAAGTGTATCAGGTTGCAATAAGAGACAGCCCTTCTGATGACCTCTTTGATTTTCTATCTGCTGAAATCCAAATTAAAGTACAATTATCTGATGATTGCAACAAGTGTCTTCGCCACCAAGGAGGCCGATGTCAACTTGACATTCACAAAAATTTCTACTGTGTCAAAGAGGATAAAAGATTGGCTTGGAAGTTAGGAATTGGCATTGGACTCCTTGTCGTTATTATAACTGGATTGCTGATTACATGGAGCTGGAAACAACGCGTTCCTAATTTCTACAACAAATACACAGAGAGTGACAGTATCTACAATGGGGTGCCAGTTTTTTCCTTTAAGGATCTTGAAGTAGCAACAAAAAAATTTGACAGTTCAAGAGAACTCGGAGAAGGAGGATTTGGGACTGTTTATTATGGAAAACTAAAAGATGGACGTGAAGTTGCTGTGAAGCGCCTATACCAGCACAACTTCAAACGAGTTGAACAGTTCATGAATGAAATCAAAATCCTCACTCGCTTGCACCACAAAAATCTAGTTACTCTTTATGGATGCACTTCACATCACAGTCATGAACTACTGCTTGTATACGAATACATTTCAAATGGAACTGTCGCCAGTCATCTGCGTGGTGAATCTGGTTTTTTGCCGTGGCATATCCGAATGAAAGTTGCCTTAGAGACTGCTACTGCTTTGGCATATCTCCATGCTTCTGAAATCATTCACCGTGATGTGAAAACAAACAACATTCTCCTTGACGATACCTTTTGCATTAAAGTTGCAGATTTTGGACTGTCAAAACTGTTCCCAAATGATGTCACACACGTCTCCACGGCTCCACAAGGAACCCCGGGCTATGTGGATCCGGAATATCATCAGTGCTACAGGCTTACAAGCAAGAGTGATGTTTACAGTTTTGGGGTTGTGCTTGTTGAGCTGATATCATCTATGCCGGCAGTTGATATGAGTAGAGATAAGGAGGAGATAAACTTAGCAAATCTAGCCATAAGGAAGATTCAAAAAAGTGCAATCAGTGAACTGGTGGATCCTTCCCTTGGTTTTGAGTCAGATAGTGACGTTAAAAGAAAAATAGTTTCAATAGCAGAACTGGCTTTTCAGTGTTTGCAATGGGATAAGGAATTGAGGCCTTCCATGAATGAGGTTTTGGAGGCACTGAGAAGAATTGATAGTGGGAGTGCGACGGATGAGTTTAGATATTTAGAGGAAGCAATAGCTCATGGAGCAGAGATATCATGTATCAATGTACATTCACTGTCACCGTCTTCATCCAACCATAATGAGGTGAAATTGTCGAAGAATAAAAAGTTAACACCTTGTCCTAAGGGTGTGACAGATAAATGGAATAGTGATTCCACTACTCCTTATGTTAGTGCTCAATCGGCAAGCCAAATGTAA 1941 0.4024 MTSLFIFKSLIFFQFLLVSAQDHETCPTAFSCGYLGQITFPFTVPQRPHCGALAIHNCENATAPKTIQLGSPPSKQFFTVPYVEGDTITVRENEAQRKTLRSKNCQAIRNFPVPPTSPLASFYIKYNITMFKCNHSLSVIPPKSFQNYKNCSGYNIYYYYLQNSSGNFTVPSSLARCKVYQVAIRDSPSDDLFDFLSAEIQIKVQLSDDCNKCLRHQGGRCQLDIHKNFYCVKEDKRLAWKLGIGIGLLVVIITGLLITWSWKQRVPNFYNKYTESDSIYNGVPVFSFKDLEVATKKFDSSRELGEGGFGTVYYGKLKDGREVAVKRLYQHNFKRVEQFMNEIKILTRLHHKNLVTLYGCTSHHSHELLLVYEYISNGTVASHLRGESGFLPWHIRMKVALETATALAYLHASEIIHRDVKTNNILLDDTFCIKVADFGLSKLFPNDVTHVSTAPQGTPGYVDPEYHQCYRLTSKSDVYSFGVVLVELISSMPAVDMSRDKEEINLANLAIRKIQKSAISELVDPSLGFESDSDVKRKIVSIAELAFQCLQWDKELRPSMNEVLEALRRIDSGSATDEFRYLEEAIAHGAEISCINVHSLSPSSSNHNEVKLSKNKKLTPCPKGVTDKWNSDSTTPYVSAQSASQM 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi625g00006 646 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
Vivi625g00006 646 Gene3D Phosphorylase Kinase; domain 1 270 374 - -
Vivi625g00006 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Vivi625g00006 646 SUPERFAMILY Protein kinase-like (PK-like) 283 578 IPR011009 -
Vivi625g00006 646 ProSiteProfiles Protein kinase domain profile. 298 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi625g00006 646 MobiDBLite consensus disorder prediction 626 646 - -
Vivi625g00006 646 Pfam Protein kinase domain 299 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi625g00006 646 FunFam Wall-associated receptor kinase-like 20 375 579 - -
Vivi625g00006 646 Gene3D Transferase(Phosphotransferase) domain 1 375 587 - -
Vivi625g00006 646 SMART serkin_6 298 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi625g00006 646 MobiDBLite consensus disorder prediction 601 646 - -
Vivi625g00006 646 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 3 632 IPR044652 GO:0004672
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi625g00006 30 640 Receptor kinase-like Gene Family AT1G25390 45.827 9.77e-165 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vivi625g00006 Pkinase 4.2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi625g00006 - - aprc:113871893 734.176