LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi625g00005	ATGGCTTCAGTTTATGTAGTAGTAGTACATCATAGGTTCCTTATGTTGTCTCATTTAACTGTGCTACTGCTACTTGTCTTAACTATCAAAGGAAATGGACACAGTGATGATTGTCCAAAGTCATTTGATTGTGGAAATCTTGGGTTTATTGGCTACCCTTTTACCAGGGTTGGATTCCCAAACTGTGGTGCATTGGCAATTCAAGGTTGTGATGATCCCAACAAAAGTGCAATGAAGACCATCCAATTAACCAAAGGAGGAAAACCCTTTCAAGTTACAAAAATTGAAAATAGCTGGTCCAGGGGTAACCCTATTTCCATTATTGACCAGAATTTTAAAAACCTTTTGATGAAAAATGCTTGTGAAGTCTACAGCCATGTTAATATTACCCTCCCTCCTCCTTCTTTTTTCGGAACTTTTTATTTGAAAGACAATATAACTGCTTTCAAATGCAACCGTACCAAAAAATTTGTCACCAACCCTCCAACCAATTTCTTCAAAAATAGTTCTTGTCTGAACTTTGATTTTTATTTCGGTGATTCAATATATGATGGTGAGTCTAATCGCTCTTTCACGTCATGCTCGTTGTTTCATCTTCCTGTCATCGGATTAGGCTTTGCACTTTCAGGTAACCCGTATCCGTTATTAGCTCATGAAATCACCTTTCAGTTTCAACCTTCTGAAGAGTGCGAACGGTGTCACCATGATACAAAACGTCACTGTCGTGCTCACAACAACGGACAAATTTATTGCCCCGGGAAGGGTTCAAATTGGAAGCTACGATTTCTCTTAGGAGTTGGTGTTGGACTATGCATCATCATTATAGTTGGATTGTTCCTCACATTATGGTACTTCAAACGGAAATATGGTCTTACTCACATCCAGCACCAACTAAGCAACAACATTTCTGCTGATTTCCATCCAAATCGTGAAATGGAGTCAAACAAGCTCTTCTTTGGGGTATCTGTCTTCTCGTATGAAGAGCTTCGACAAGCAACAAACAATTTTGACCGCAGTAGAAAGCTAGGAGATGGAGGTTTTGGCACTGTTTACTATGGTAAAATCAAAGATGGAAGGGAAGTTGCTGTCAAACACTTATTTGAGCATAATTACAGGAGAGTAGAACAGTTTGTGAATGAAATCGAAGTACTCGCTCGCCTGCACCATAGGAACCTTGTGTCCCTCTATGGCTGCACTTCACGTTACAGCCGTGAACTACTCCTTGTATATGAATACATTCCAAATGGAACCGTCGCTAGCCATCTCCATGGTAATTTAGCTAGGGCCGGTTTGTTGACATGGCCTATTCGAATGCAAATTGCAATAGAAACTGCTTCTGCATTGGCTTATCTACACGCTTCCGACATCATTCACCGTGATGTCAAAACCAACAACATTCTACTTGACGTTAACTTTTCTGTTAAGGTAGCTGATTTTGGACTATCGAGGTTGTTTCCGAACAATGTCAGCCATGTTTCAACAGGTCCACAAGGAAGTCCGGGTTATCTAGACCCTGAATATCTCCAACTCTACAAGCTCTCAGTGAAGAGTGATGTTTATAGTTTTGGCGTTGTGCTCATCGAGCTAATATCGTCTATGACAGCAATTGATTCTGCTAGAGAAAAAGAGGAAATTAACTTGGCGAATCTAGCAGCTAAGAAGATAAGAAAAGGAGCAATTGGGGAATTGGTTGACCCATCACTTGGTTTTGAATCAGATAGTGAAGTTAAAAGGATGATAACTTCAGTGGCAGAATTGGCTTTTCAGTGTGTGCTTGGAGACATGGAATTAAGACCTTCCATGGATCAAGTTTTGCAAGAACTCAAGAAAATTGATGGTGGGAATTTTGAGTTTGATCATGTAGAGAAAGTACATGATTATGCTGGCTCCTCGCAGTCTGGAGAAGTAAATTCACCAATAGTTGGAACTTCTATCAATCAAAAGCAAGAAGGATCAACTTCACCAAAGTCATTGACTGAGAAATGGGAATGTGACTCTACTACAACCAATGTTAGTGGTTAA	2022	0.4001	MASVYVVVVHHRFLMLSHLTVLLLLVLTIKGNGHSDDCPKSFDCGNLGFIGYPFTRVGFPNCGALAIQGCDDPNKSAMKTIQLTKGGKPFQVTKIENSWSRGNPISIIDQNFKNLLMKNACEVYSHVNITLPPPSFFGTFYLKDNITAFKCNRTKKFVTNPPTNFFKNSSCLNFDFYFGDSIYDGESNRSFTSCSLFHLPVIGLGFALSGNPYPLLAHEITFQFQPSEECERCHHDTKRHCRAHNNGQIYCPGKGSNWKLRFLLGVGVGLCIIIIVGLFLTLWYFKRKYGLTHIQHQLSNNISADFHPNREMESNKLFFGVSVFSYEELRQATNNFDRSRKLGDGGFGTVYYGKIKDGREVAVKHLFEHNYRRVEQFVNEIEVLARLHHRNLVSLYGCTSRYSRELLLVYEYIPNGTVASHLHGNLARAGLLTWPIRMQIAIETASALAYLHASDIIHRDVKTNNILLDVNFSVKVADFGLSRLFPNNVSHVSTGPQGSPGYLDPEYLQLYKLSVKSDVYSFGVVLIELISSMTAIDSAREKEEINLANLAAKKIRKGAIGELVDPSLGFESDSEVKRMITSVAELAFQCVLGDMELRPSMDQVLQELKKIDGGNFEFDHVEKVHDYAGSSQSGEVNSPIVGTSINQKQEGSTSPKSLTEKWECDSTTTNVSG	673

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi625g00005	673	SMART	serkin_6	336	609	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi625g00005	673	MobiDBLite	consensus disorder prediction	630	673	-	-
	Vivi625g00005	673	MobiDBLite	consensus disorder prediction	627	673	-	-
	Vivi625g00005	673	Gene3D	Phosphorylase Kinase; domain 1	307	412	-	-
	Vivi625g00005	673	SUPERFAMILY	Protein kinase-like (PK-like)	315	608	IPR011009	-
	Vivi625g00005	673	Gene3D	Transferase(Phosphotransferase) domain 1	413	617	-	-
	Vivi625g00005	673	FunFam	Wall-associated receptor kinase-like 20	413	620	-	-
	Vivi625g00005	673	Pfam	Protein kinase domain	337	606	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi625g00005	673	ProSiteProfiles	Protein kinase domain profile.	336	628	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi625g00005	673	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	19	669	IPR044652	GO:0004672
	Vivi625g00005	673	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	456	468	IPR008271	GO:0004672\|GO:0006468
	Vivi625g00005	673	ProSitePatterns	Protein kinases ATP-binding region signature.	342	364	IPR017441	GO:0005524

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi625g00005	40	673	Receptor kinase-like Gene Family	AT1G25390	45.356	8.55e-161	475

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK_LRK10L-1	Vivi625g00005		Pkinase	6.7e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi625g00005	-		-	aprc:113871895	753.051