Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi623g00009 ATGGCGTTAGATCAATACATGTCCCAAAACAATTTCTTTGAAGATAAACCGTCTTTGAAAACCTGGAATACCACCACAGATTCTAATAGAAATGCATCTGCTGGCTTTGACTGCAACATCTGCTTAGAGTGTGTGCAAGATCCAGTAGTCACGTTTTGTGGTCACCTTTACTGCTGGCCTTGCATTTACAAATGGATTCATATGCAAACAAGTATCTCTTCCGAATATGAGGAGAAGCAGAAGCCACAATGTCCAGTATGCAAATCAGAACTGTCTCAATCCTCGCTAGTTCCATTATACGGCCGTGGCCAATCCACGACAGCTTGTCAAGCTGGGAATGATGTACCTCAAAGACCTTTGGGTCCCAGATCATATAATACTACAACTGTTTCACAACCTACTTATCAAAGTTATTATCATCCTCGACAGTTCAACTCAATTCCTAGCAGTTACCCTTCACCCATGTTTAGCACAAGTGGTTCGTCATTGGACAACTCATTTGGAATCTTCGGTGAAATGATATACGCGAGGGTGTTCGGTAACCAGATGGAAAACATGTATACATATCGTAATTCGTATAGTTTTCAAGGGAACAATAATCCAAGGGTTAGAAGACATTTAATGCAAGTTGATAAATCACTAAGCAGAATCTTTTTTTTCCTCCTTTGCTGCTTAGTTATGTGTCTTCTCTTATTCTGA 699 0.4006 MALDQYMSQNNFFEDKPSLKTWNTTTDSNRNASAGFDCNICLECVQDPVVTFCGHLYCWPCIYKWIHMQTSISSEYEEKQKPQCPVCKSELSQSSLVPLYGRGQSTTACQAGNDVPQRPLGPRSYNTTTVSQPTYQSYYHPRQFNSIPSSYPSPMFSTSGSSLDNSFGIFGEMIYARVFGNQMENMYTYRNSYSFQGNNNPRVRRHLMQVDKSLSRIFFFLLCCLVMCLLLF 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi623g00009 232 ProSitePatterns Zinc finger RING-type signature. 53 62 IPR017907 -
Vivi623g00009 232 Pfam Zinc finger, C3HC4 type (RING finger) 38 87 IPR018957 GO:0046872
Vivi623g00009 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 105 IPR013083 -
Vivi623g00009 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 10 230 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vivi623g00009 232 SMART ring_2 38 87 IPR001841 -
Vivi623g00009 232 ProSiteProfiles Zinc finger RING-type profile. 38 88 IPR001841 -
Vivi623g00009 232 SUPERFAMILY RING/U-box 35 100 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi623g00009 31 232 C3H Transcription Factor Family AT4G28270 42.233 1.08e-49 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi623g00009 K10666 - gmx:100786373 286.96