Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi622g00001 ATGGCGAGAACACCTTATTGTGACAAAAGTGGAATGAGGAAAGGGACTTGGACTGCTGAGGAAGATAGGAAATTAATTGCGTATGTAACTAGATATGGTTGCTGGAATTGGCGCCAACTCCCTAAGTTTGCAGGTCTTTCGAGGTGTGGGAAGAGTTGTCGGTTGAATTATCTAAGGCCTAATATCAAAAGAGGGAACTTCACTCAACAAGAAGAGGAACTGATTATCCGAATGCATAAAAATCTGGGCAATAGATGGTCTGTCATTGCGGCTGAGTTACCTGGAAGAACTGATAACGAAATAAAGAACCATTGGCATACTTCTCTTAAGAAGAGAGCTCAACAGATGAACACAGTCTCAAATGAAGAAACCATAGCCACCAAATCTCAAGCTAGTTCCCATATCTCAGACATCACTGGCCCATTATCTCCATTTTCATCATCCAGTGAATTCTCTTCCACAACATCAGATCAGAGTTTCACTGCATTGGAAGATTTTGGTTTTCTGGATTCGTTTATAGAATCTATGGATGACAGTTTTATGCTTGATAATGACTTTACAAGCTTTGTAGATGCGTATACAGAGTCAACAGTTGATAGTTTTTGGACGCACCCATATGAAGGTGACATGTCCCCCATTCTATAG 645 0.4062 MARTPYCDKSGMRKGTWTAEEDRKLIAYVTRYGCWNWRQLPKFAGLSRCGKSCRLNYLRPNIKRGNFTQQEEELIIRMHKNLGNRWSVIAAELPGRTDNEIKNHWHTSLKKRAQQMNTVSNEETIATKSQASSHISDITGPLSPFSSSSEFSSTTSDQSFTALEDFGFLDSFIESMDDSFMLDNDFTSFVDAYTESTVDSFWTHPYEGDMSPIL 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi622g00001 214 Pfam Myb-like DNA-binding domain 64 107 IPR001005 -
Vivi622g00001 214 Pfam Myb-like DNA-binding domain 14 58 IPR001005 -
Vivi622g00001 214 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 54 IPR017930 -
Vivi622g00001 214 ProSiteProfiles Myb-like domain profile. 9 57 IPR001005 -
Vivi622g00001 214 Gene3D - 65 136 - -
Vivi622g00001 214 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 165 - -
Vivi622g00001 214 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
Vivi622g00001 214 CDD SANT 66 109 IPR001005 -
Vivi622g00001 214 SUPERFAMILY Homeodomain-like 11 105 IPR009057 -
Vivi622g00001 214 SMART sant 13 60 IPR001005 -
Vivi622g00001 214 SMART sant 63 111 IPR001005 -
Vivi622g00001 214 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Vivi622g00001 214 FunFam MYB-related transcription factor 13 63 - -
Vivi622g00001 214 Gene3D - 14 63 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi622g00001 1 183 MYB Transcription Factor Family AT2G31180 51.562 3.35e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi622g00001 Myb_DNA-binding 3.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi622g00001 K09422 - gmx:778087 271.166