Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi617g00002 ATGGCTACATACTTTCATAATAATTCAGAAATTCAAGGTGGTTCTACCGACGGACTACAAACACTGATATTTATGAACCCGTCGGGATACATCAATTACTCCGACGCGCCGCCGCAACAGCAGCAACAGAATCTGATTTTTCTCAATTCAGCCGCCGCGCTCACCGGAAACACTTCACTCCAGCAACAGAACCTATCTCAGCCGCCACCACAATTCGTCGGTGTTCCACTCTCGGCGGAACACTCTGTACACGCCCATCATGATGTCTCGGCCCTGCATGGCTTCCCTCCGCGCATGCAGTACAACATGTGGAACGCAGCTGACCCGAATTCCACGGCGCGTGAAGGCACACGCGCTACTCAGGGACTGTCTTTAAGCTTACACGCACAAGGTTCCGGCGAGGACGGCCGTGTTTCGAATGGTGGACAGTGTTCCTCTGTCTCTGGTGGGGTTTCCGGGATTCAGAGTGTGTTGTTGAGTTCTAAGTATTTGAAGGCTACACAGGAGTTACTTGACGAGGTTGTTAATGTTAATGGTGGGATTAAGGTTGAGAGTGCTAAGAAGAGTTTTGAGAAGAATAAGGTTGTTGGAGAATCTTCAACTGCGGTTAGTGGTGATGGTGGTTCTGTTGGTGGTGGTGGTGATGGAAATGGAAAACGTAGCTCTGAGTTATCAACTACTGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGTTAATTAACATGCTTGATGAAGTGGAACAAAGATACAGACAATACCACAACCAAATGCAGATGGTGATATCCTCATTTGAGCAAGTAGCAGGGATTGGTTCTGCAAGAACATACACTGCACTTGCACTTCAAACGATTTCGAAGCAATTTCGGTGCTTAAAAGATGCAATCACAGGCCAAATTAGAGCAGCAAATAAGAGCTTAGGAGAAGATGATAGTTTTGGTGGCAAAATTGAAGGGTCAAGACTCAAATATGTTGATCATCATTTGAGACAGCAAAGAGCTATTCAACAATTGGGTATGATTCATCATAATGCTTGGAGACCTCAAAGAGGATTGCCTGAAAGATCGGTTTCGGTTCTTCGTGCGTGGCTTTTTGAGCACTTCCTTCACCCTTATCCAAAGGATTCAGACAAACATATGCTTGCAAAACAAACCGGACTTACTAGGAGCCAGGTATCGAATTGGTTCATAAATGCGCGAGTTCGTCTTTGGAAACCAATGGTGGAAGAAATGTACACCGAAGAGATGAAGGATCAAGAGGCAAATGGTTCTGAGGAAAACAAATCAAGCAAGAATACCGATGAAGATCCTTCGATGAAAACAACAACTCCACAAGAAAGAGTTCCAACTTCAGAAACAGAATCCAAAAGTTTCAATTCCAAACAAGACCTTTCTGTAGTTCCGGTTTCAGCACAATCAACATCACCAATTGGTGTCAATGTTAGAAACAATTCAGGATTCAGCTTCACCGAACTCGATGGAATAACTCAAGCAAGTCCAAAAAGAACAAGGAACCATGAGATTCTTCATTCTCCGAATCAAATGAAATCTAACGAGACAGAAAATAATGAACAAATTTCGATGAAATTTGGTGGTGACAGACAAAGTAGAGATGGTTATTGTTTCATGGGAAACCAAACTAATTTCATCGCCGGATTTGGTCAATACCCTATGGAGGAAATCGGAAGATTCGACGCAGAAGAATTCGCGCCGAGGTTTTCAGGTAATAATGGCGTTTCACTCACTCTTGGTTTGCCTCATTGTGACACATTATCAGGAACACATCAAAGTTTTATACCAAACCAAAACATTCAACTAGGAAGAAGGTTGGAAATGAATGAAACAAATGAGTTTGGTGCTATAAACAATTCAAATTCTCATTCTTCAGCTGCATTTGAGAGCATCAACATGCAGAATCCAAAGAGGTTCGCTGCACAATTGCTGCCCGATTTCGTGGCCTAA 1959 0.4313 MATYFHNNSEIQGGSTDGLQTLIFMNPSGYINYSDAPPQQQQQNLIFLNSAAALTGNTSLQQQNLSQPPPQFVGVPLSAEHSVHAHHDVSALHGFPPRMQYNMWNAADPNSTAREGTRATQGLSLSLHAQGSGEDGRVSNGGQCSSVSGGVSGIQSVLLSSKYLKATQELLDEVVNVNGGIKVESAKKSFEKNKVVGESSTAVSGDGGSVGGGGDGNGKRSSELSTTERQEIQMKKAKLINMLDEVEQRYRQYHNQMQMVISSFEQVAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEDDSFGGKIEGSRLKYVDHHLRQQRAIQQLGMIHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYTEEMKDQEANGSEENKSSKNTDEDPSMKTTTPQERVPTSETESKSFNSKQDLSVVPVSAQSTSPIGVNVRNNSGFSFTELDGITQASPKRTRNHEILHSPNQMKSNETENNEQISMKFGGDRQSRDGYCFMGNQTNFIAGFGQYPMEEIGRFDAEEFAPRFSGNNGVSLTLGLPHCDTLSGTHQSFIPNQNIQLGRRLEMNETNEFGAINNSNSHSSAAFESINMQNPKRFAAQLLPDFVA 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi617g00002 652 Coils Coil 229 256 - -
Vivi617g00002 652 Pfam Associated with HOX 157 296 IPR006563 -
Vivi617g00002 652 FunFam BEL1-like homeodomain protein 9 348 410 - -
Vivi617g00002 652 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 60 430 - -
Vivi617g00002 652 MobiDBLite consensus disorder prediction 435 468 - -
Vivi617g00002 652 Pfam Homeobox KN domain 362 401 IPR008422 GO:0003677|GO:0006355
Vivi617g00002 652 MobiDBLite consensus disorder prediction 414 434 - -
Vivi617g00002 652 SMART HOX_1 345 409 IPR001356 GO:0003677
Vivi617g00002 652 SMART prehox3 152 297 IPR006563 -
Vivi617g00002 652 Gene3D - 341 420 - -
Vivi617g00002 652 MobiDBLite consensus disorder prediction 194 229 - -
Vivi617g00002 652 MobiDBLite consensus disorder prediction 414 468 - -
Vivi617g00002 652 SUPERFAMILY Homeodomain-like 346 412 IPR009057 -
Vivi617g00002 652 CDD homeodomain 345 406 IPR001356 GO:0003677
Vivi617g00002 652 ProSiteProfiles 'Homeobox' domain profile. 342 405 IPR001356 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi617g00002 1 652 Homeobox Transcription Factor Family AT2G35940 50.946 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vivi617g00002 POX 2.2e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi617g00002 - - gmx:100810851 942.184