Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi616g00014 ATGGGACTTCATCACAGAAAACTGCTATTATCCTCTGACTGTGAACAATTCTGTCATGATGCAGAGTTATGTTCTACAAACTGTGATGATTGTCTCGCCAACTGCAATAGCTACCACCCTCCACCACCACCATCTTTGGATCACACCAAACACAAAACCGCCACTTACTTGATCATAAGTTTTTCTATGGTAGCATTTGTTTTCATTGTTTTATGCTGCTATGCTATCTATGTCAAGTTTTTCTCCCGCAGGAACAGTTCAAGAAGGAGAACCTTGTTAACAAGGCAACAAACGGAACATGGTTTTGCTGTTGATGAACAACATGATGATGGTTCTGTTGTTGACCACCCCATATGGTATATTCGAACTCCTGGTCTTCAACAAGCAGTTATTAATGCAATCACTGTTGTTAAATTTAAGAAAGGTGAAGGCTTGATTGATGGGTCGGATTGTTCTGTTTGTTTGAGTGAGTTTGAAGAAGATGAGAATCTTAGACTTTTGCCTAAGTGTAACCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTGGATCACACACTAGTTGTCCTATGTGTAGAGCTCCTATTGTTGTTGATCCTCTAAGGATTCCATCTATGGAGCCTAATGTTTTTGTCGAAAGTTCTCGGATAGAAGATTCGGAAAATAACGGTGAACCTGGAATTGGAATTGAAGATAGAGTTGTTGATGATCAATTGAGAAATGGTGAAGAAGAGGAAGAAGAAGATGAAGAGGTTGAGGAAAATGAGAGTTCAGCTTTAGAGATGGTAAATGTGCAGCCAAGAAGATCAGTTTCTTTTGATTCTTCTTCTGCTGCTAAGATCAATCTTGCTCTTTCCAATAAGCAAGAGGTAGGTGAAGTCAATGAACAAATTGTTTCAAAGAGGGTTGGTGGAAATGGCAATATGGGAAATATGCATAGTGCTCCTAGCTCAATGGATAGGTCAAGATCCTTCAATGGAAAACATCTACTATCTTTGTATAGCAGCAATCAGAAGAAGTCAAATGTTCCACCTAGAAGCTTTTGA 1047 0.3897 MGLHHRKLLLSSDCEQFCHDAELCSTNCDDCLANCNSYHPPPPPSLDHTKHKTATYLIISFSMVAFVFIVLCCYAIYVKFFSRRNSSRRRTLLTRQQTEHGFAVDEQHDDGSVVDHPIWYIRTPGLQQAVINAITVVKFKKGEGLIDGSDCSVCLSEFEEDENLRLLPKCNHAFHLPCIDTWLGSHTSCPMCRAPIVVDPLRIPSMEPNVFVESSRIEDSENNGEPGIGIEDRVVDDQLRNGEEEEEEDEEVEENESSALEMVNVQPRRSVSFDSSSAAKINLALSNKQEVGEVNEQIVSKRVGGNGNMGNMHSAPSSMDRSRSFNGKHLLSLYSSNQKKSNVPPRSF 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi616g00014 348 MobiDBLite consensus disorder prediction 310 348 - -
Vivi616g00014 348 SUPERFAMILY RING/U-box 145 199 - -
Vivi616g00014 348 MobiDBLite consensus disorder prediction 301 348 - -
Vivi616g00014 348 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 48 198 IPR044675 -
Vivi616g00014 348 MobiDBLite consensus disorder prediction 241 257 - -
Vivi616g00014 348 Coils Coil 235 255 - -
Vivi616g00014 348 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Vivi616g00014 348 SMART ring_2 151 192 IPR001841 -
Vivi616g00014 348 Pfam Ring finger domain 150 193 IPR001841 -
Vivi616g00014 348 MobiDBLite consensus disorder prediction 215 258 - -
Vivi616g00014 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 199 IPR013083 -
Vivi616g00014 348 FunFam RING-H2 finger protein ATL54 126 199 - -
Vivi616g00014 348 CDD RING-H2_EL5-like 150 193 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi616g00014 44 262 C3H Transcription Factor Family AT1G72220 40.183 2.78e-46 160