Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi616g00001 ATGACTAGAAAGAAGATACAGATAAAGAAAATTGACAACATCAGTTCAAGGCAAGTGACTTTCTCTAAGAGGAGGAAAGGGCTTTTCAAGAAAGCTCATGAGCTATCAACTCTCTGTGATGCAGATGTAGGTCTTCTGGTTTTTTCTTCTACTAATAAGCTCTTTGAGTATGCTAGTTCAAGCATGCAACAAATAATTGAAAGGCGTAATGGTTGTTCAGAAAATCATAGATTAATGGGGCATCAATCTACGGATCAGTTTCAGATTGAGAGTGAGTCCAGCAACACACTGCGTAAGAAATTAGAAGATAAATCTCAAGAACTGAGGCAAATGAATGGAGAAGATTTGCAAGAATTGACAGTACAAGAACTCCAAAAACTAGAGGCTCAACTCAGAAGAAGTTTGTCCAGTGTTTCAAAAGTGAAGGATGAAAAGTTTATGCAAAGCATCAACACCCTTAAGAGAAAGGAAGTGGAACTGATCCAAGAAAATCAAAGATTGAAGCATGCGGTACCAGACCTGATAATTGGACAAAGGCAACAGTCGTTGGAATCGGTTATTAGCGGTTCATCTTATTTTCTTGATCAAGACGATGGCAGTGACACATCTCTCAAGTTAGGGTTAACATTACATAATTAA 639 0.3787 MTRKKIQIKKIDNISSRQVTFSKRRKGLFKKAHELSTLCDADVGLLVFSSTNKLFEYASSSMQQIIERRNGCSENHRLMGHQSTDQFQIESESSNTLRKKLEDKSQELRQMNGEDLQELTVQELQKLEAQLRRSLSSVSKVKDEKFMQSINTLKRKEVELIQENQRLKHAVPDLIIGQRQQSLESVISGSSYFLDQDDGSDTSLKLGLTLHN 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi616g00001 212 FunFam Transcription factor, MADS-box 13 84 - -
Vivi616g00001 212 Pfam K-box region 88 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi616g00001 212 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Vivi616g00001 212 Coils Coil 124 144 - -
Vivi616g00001 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi616g00001 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 156 - -
Vivi616g00001 212 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi616g00001 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi616g00001 212 ProSiteProfiles K-box domain profile. 87 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi616g00001 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi616g00001 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi616g00001 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi616g00001 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi616g00001 212 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Vivi616g00001 212 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Vivi616g00001 212 Coils Coil 94 114 - -
Vivi616g00001 212 Coils Coil 150 170 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi616g00001 1 209 MADS-box Gene Family AT4G24540 46.789 9.35e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi616g00001 K-box 2.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi616g00001 - - aprc:113860188 268.085