Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi612g00008 ATGGCTTCAAGATCCGTGGAAGGAGACCAATCAACGCAAGCTGAAGATGATTACAATGCCATGCTTTCAACCACTGATGTTGAACTTCTCAAACGAGCTTGGCGTAATGAGAAGGCAGCACCAGAGATTCTTCCTTTTCAATCGGATTTGATTGCACGTGTCAGAGAACAAATTGAATTGATGGAAGAGACTGTGGAGGAAAAATCTAGTGTTGGGACTGACCCTCTTTCGGTGTCTCTGTATCAAATGGATTTGGATAGAACCCTGTTTCTGTTAAGGTCATATCTTCGTATTCGTATCTTGAAGATTGAAAAGTACATGTTCCACATCCGGAAAACTGATGAACTTTGGAACAGGCTTTCTAAGGATGAGAAATTTTTCACCGAAAGGTGCACAGATGACTTAAAGAAACATCTGGAGGAGAGTGTTCTATCAAAACTGCCTGAAAATTATCAGTCTCATGAGAGGCAATCCATAATTAGCGAAGAGGATGACATGATTCCAGAGCCGCGACTAGACACATTTGTTTTGTGTAGAAGTAAAGATTATCTCACAGGCATTCAGCTTGGAGACGGACCTGTTGATGACAGGTCAAAGCTGTTTGAAATGGAGGCTGGTGTCCTTTACTTTATATGTTACAAATCAATAAAGCCACTAGTAGAGAGTGGCAAAATTGAACTACTATGA 687 0.409 MASRSVEGDQSTQAEDDYNAMLSTTDVELLKRAWRNEKAAPEILPFQSDLIARVREQIELMEETVEEKSSVGTDPLSVSLYQMDLDRTLFLLRSYLRIRILKIEKYMFHIRKTDELWNRLSKDEKFFTERCTDDLKKHLEESVLSKLPENYQSHERQSIISEEDDMIPEPRLDTFVLCRSKDYLTGIQLGDGPVDDRSKLFEMEAGVLYFICYKSIKPLVESGKIELL 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi612g00008 228 PIRSF GINS_Sld5 1 228 IPR008591 GO:0006261
Vivi612g00008 228 CDD GINS_B_Sld5 170 228 IPR031633 -
Vivi612g00008 228 Gene3D - 11 218 - -
Vivi612g00008 228 FunFam DNA replication complex GINS protein SLD5 11 218 - -
Vivi612g00008 228 Coils Coil 51 71 - -
Vivi612g00008 228 PANTHER SLD5 PROTEIN 11 228 IPR008591 GO:0006261
Vivi612g00008 228 Pfam DNA replication complex GINS protein SLD5 C-terminus 170 228 IPR031633 -
Vivi612g00008 228 SUPERFAMILY PriA/YqbF domain 172 228 - -
Vivi612g00008 228 SUPERFAMILY GINS helical bundle-like 23 158 IPR036224 -
Vivi612g00008 228 CDD GINS_A_Sld5 26 144 IPR038749 -
Vivi612g00008 228 Pfam GINS complex protein 54 125 IPR021151 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi612g00008 1 166 Core DNA Replication Machinery Family AT5G49010 62.651 2.62e-67 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi612g00008 K10735 - qsa:O6P43_008399 351.673