Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi60g00009 ATGGCTACTTCATTAGAAAAATCCATCCCCGTGTTCTTTCTGTGCTTCTTAAATGGAGTTGTAATTGCAGAAGCTACATCCCATGATGACCAGTGCAAGGAATCAAGTTGTGATGGTATTCATGGACCATTCATTAGATTTCCTTTCACACTCAAAGGAAAACAACCAAAATGGTGTGGCTACGATAACTCCCGGTTTGAAGTATATTGCTCACACACCAACCAAACTGTGTTGGAACTACCCTTTTCTACTAAAGCCATCATCAAAACCATAAACTACACTTCACAAATCTTAACAGTGTCTTATCCTGAACTCTGCCTTAACAAACAGCTTCCCAATTTCGATATATCCTCATCTCCTTTTCAGTTCAACTCTGAGTTTGGACTCCGTGAGTATGCTCTATTCAACTGTTCAGGGACTAATCACAGAAACACAGATGATAATAATCATGATATAATAACATTTGGAAACTTTTCATGCCTCAACTTGCCAGGATTTGAAGTTATAGCAGTGGACTCCAGATCATCAATAATCTGGATACCTTTGTTGTCCTGTACGAGAATCCAAAACATTGTAATGTTGCCTAATTCTTTGTTTAACAACAATGTTGATGCTGGTCTCAATTGGAACCAACCAGATTGCAGAAACTGTGAACAAAACGGTGGGCAATGCAAGGCCAAGAGAAACACATCCCAACACGAATTCGAATGCAGAGGTATCACTAAAGGTTTCCCAAAAGGAAAAGTGATTGCCGGTGTCCTAGGCCCATTTTCTCTGATATTTGTTGGAGTCGCAACATATTGTATCTATGTAGCTTGCATTGAAAGGAAGAATTACATAAGGATCAAAAAGTTTCTGAAGGACTATAAAGCTCTTAAGCCTGCTAGATATACTTACGCGGATATAAAAAGAATTACAAATCATTTTAAGGACGAACTGGGGCAAGGAGCTTTTGGATCTGTCTTCAAAGGAAAGCTATCAAATGAAGTTCATGTAGCTGTTAAGGTCCTAAACACTTCAACAGGAAACGGCCAAGAGTTCATCAATGAGATGGAAGCAATGTGTCAGATTCACCACATCAACGTGGCTCGCTTAGTTGGCTTTTGTGCAGACGGAAACAAAAGAGCTTTGGTGTATGAATTTTTACCAAAAGGTTCGTTGCAGAAATTCATATCGTCTGCAGACACTAAGGATGTCTTTTTAGGTTGGGAAAGACTACAAAACATTTCTCTCGGTATAGCTAAGGGAATTGGGTATCTTCACCAAGGTTGTGACAAAAGAATTCTCCATTTCGATATCAAACCACATAATGTATTGCTAGACGATAATTTCACACCCAAAATTTCTGATTTTGGTTTGGCCAAACTTTGTTCCAAGGAAAGAAGTATTGTCTCAATGACCACAGCTAGGGGAACTTTGGGCTACATTGCACCAGAGGTATTTTCTAGGAACTTTGGTAATGTTTCCTATAAGTCAGATGTTTATAGTTTTGGGATGGTGCTTCTTGAAATGGTTGGGGGGAGGAAAATAACCGATGACACTGAAGAAAATAGCAACCACGTTCACTATCCACAATGGATTTATAATCTTTTAGAGAATGAGGAAGATATGAAAATCCATATAGAAGGAGAAGAAGACGCTAGGATTGCAAAGAAGCTATCAGTTGTGGGGCTTTGGTGCATTCAGTGGCACCCAGCGAATCGTCCGACCATGAAGGCTGTGGTTCAAATGTTGGAAGGAAATGGAGAGAAGTTAGAGATGCCGCCTAATCCTTTTGCTTCTGCATCAGCAACTAGAACGAATGCTGCAAGGCGTCTGAACTTGGAACTCGATGTCATCTCAGAAATAGAGTGA 1854 0.3986 MATSLEKSIPVFFLCFLNGVVIAEATSHDDQCKESSCDGIHGPFIRFPFTLKGKQPKWCGYDNSRFEVYCSHTNQTVLELPFSTKAIIKTINYTSQILTVSYPELCLNKQLPNFDISSSPFQFNSEFGLREYALFNCSGTNHRNTDDNNHDIITFGNFSCLNLPGFEVIAVDSRSSIIWIPLLSCTRIQNIVMLPNSLFNNNVDAGLNWNQPDCRNCEQNGGQCKAKRNTSQHEFECRGITKGFPKGKVIAGVLGPFSLIFVGVATYCIYVACIERKNYIRIKKFLKDYKALKPARYTYADIKRITNHFKDELGQGAFGSVFKGKLSNEVHVAVKVLNTSTGNGQEFINEMEAMCQIHHINVARLVGFCADGNKRALVYEFLPKGSLQKFISSADTKDVFLGWERLQNISLGIAKGIGYLHQGCDKRILHFDIKPHNVLLDDNFTPKISDFGLAKLCSKERSIVSMTTARGTLGYIAPEVFSRNFGNVSYKSDVYSFGMVLLEMVGGRKITDDTEENSNHVHYPQWIYNLLENEEDMKIHIEGEEDARIAKKLSVVGLWCIQWHPANRPTMKAVVQMLEGNGEKLEMPPNPFASASATRTNAARRLNLELDVISEIE 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi60g00009 617 Pfam Protein kinase domain 309 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi60g00009 617 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
Vivi60g00009 617 Pfam Wall-associated receptor kinase galacturonan-binding 32 100 IPR025287 GO:0030247
Vivi60g00009 617 Gene3D Transferase(Phosphotransferase) domain 1 382 587 - -
Vivi60g00009 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
Vivi60g00009 617 PANTHER RUST RESISTANCE KINASE LR10-RELATED 278 596 IPR045874 GO:0004672
Vivi60g00009 617 SUPERFAMILY Protein kinase-like (PK-like) 292 579 IPR011009 -
Vivi60g00009 617 ProSiteProfiles Protein kinase domain profile. 307 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi60g00009 617 Gene3D Phosphorylase Kinase; domain 1 270 381 - -
Vivi60g00009 617 SMART serkin_6 307 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi60g00009 617 FunFam serine/threonine-protein kinase PBS1-like 275 381 - -
Vivi60g00009 617 FunFam PR5-like receptor kinase 382 590 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi60g00009 213 600 Receptor kinase-like Gene Family AT1G66910 44.928 5.07e-109 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi60g00009 Pkinase 2.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi60g00009 - - tpra:123914140 1051.58