Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi60g00008 ATGGCTATTATTTGGTTACAAAAACTCATACCTCTCATCTTTCTTTGCTTCTTAACTACCGCTGCAGCTGCAGAAACTACTTCCCTCGATGACCAGTGCAAGAAATCAAGTTGTGATGGTATTCATGGACCATTCATTAGATTTCCTTTCAGACTCAAAGGAAAACAACCAAAATGGTGTGGCTACGATAACTCCCGGTTTGAAGTATATTGCTCACACACCAACCAAACTGTGTTGGAACTACCCTTTTCTACTAAAGCCATCATCAAAACCATAAACTACACTTCACAAATCTTAACAGTGTCTTATCCTGAACTCTGCCTTAACAAACAGCTTCCCAATTTCGATATATCCTCATCTCCTTTTCAGTTCAACTCTGAGTTTGGACTCCGTGAGTATGCTCTATTCAACTGTTCAGGGACTAATCACAGAAACACATATAATAATAATCATGATATAATAACATCTGGAAACTTTTCATGCCTCAACTTGCCAGGATTTGAAGTTATAGCAGTGAATTCCGAATCATCAATAATCTGGATGCCTTTGTTGTCCTGTACTAGAATCCAAAACCTTGTAATGTTGCCTAATTCTTTGTTTAACAACAATGTTGATGCTGGTCTCAATTGGAACCAACCAGATTGCAGAAACTGTGAACAAAACGGTGGGCAATGCAAGGCCAAGAGAAACACATCCCAACACGAATTCGAATGCACGGGTATCACTAAAGGTTTCCCAAAAGGAAAAGTGATTGCCGGTGTCCTAGGCCCATTTTCTCTGATATTTGTTGGAGTCGCAACATATTGTATCTATGTAGCTTGCATTGAAAGGAAGAATTACATAAGGATCAAAAAGTTTCTGAAGGACTATAAAGCTCTTAAGCCTGCTAGATATACTTACGCGGATATAAAGCGAATTACAAATCATTTTAAGGACGAACTGGGGCAAGGAGCTTTTGGATCTGTCTTCAAAGGAAAGCTATCAAACGAAGTTCATGTAGCTGTTAAAGTCCTAAACACTTCAACAGGAAATGGCCAAGAGTTCATCAATGAGATGGAAGCAATGTGTCAGATTCACCACATCAACGTGGCTCGCTTGGTTGGCTTTTGTGCAGACGGAAACAAACGAGGTTTGGTGTATGAATTTTTACCAAAAGGTTCGTTGCAGAAATTCATATCGTCTGCAGACACTAAGGATGTCTTTTTAGGTTGGGAAAGACTACAGAACATTTCTCTCGGTATAGCTAAGGGTATCGAGTATCTTCACCAAGGTTGTGACAAACGAATTCTCCATTTCGATATCAAACCCCATAATGTATTGCTAGACGATAATTTCACACCCAAAATTTCTGATTTTGGTTTGGCCAAACTTTGTTCCAAGGAAAAAAGTATTGTATCAATGACCACGGCTAGGGGAACTTTGGGCTACATTGCACCAGAGGTATTTTCTAGGAACTTTGGTAATGTTTCCTATAAGTCCGATGTTTATAGTTTTGGGATGGTGCTTCTTGAAATGGTTGGAGGAAGGAAAATAACCGATGACACGAAAGAAAATAGCAACGATGTTCACTATCCACAATGGATTTATAATCTTTTAGAGAATGAGGAAGATATAAAAATCCATATAGAAGGAGAAGAAGACGCTAGGATTGCAAAGAAGCTATCAGTTGTGGGACTTTGGTGCATTCAGTGGCACCCAGCGAATCGTCCGACCATGAAGGCTGTGGTTCAAATGCTGGAAGGAAATGGAGAGAAGTTAGAGATGCCGCCTAATCCTTTTGCTTCTGCATCAGCAACTAGAACGAATGCTGCTAGGCGTCTGAACTTGGAACTCGATGTGATCTCAGAAATAGAGTGA 1857 0.399 MAIIWLQKLIPLIFLCFLTTAAAAETTSLDDQCKKSSCDGIHGPFIRFPFRLKGKQPKWCGYDNSRFEVYCSHTNQTVLELPFSTKAIIKTINYTSQILTVSYPELCLNKQLPNFDISSSPFQFNSEFGLREYALFNCSGTNHRNTYNNNHDIITSGNFSCLNLPGFEVIAVNSESSIIWMPLLSCTRIQNLVMLPNSLFNNNVDAGLNWNQPDCRNCEQNGGQCKAKRNTSQHEFECTGITKGFPKGKVIAGVLGPFSLIFVGVATYCIYVACIERKNYIRIKKFLKDYKALKPARYTYADIKRITNHFKDELGQGAFGSVFKGKLSNEVHVAVKVLNTSTGNGQEFINEMEAMCQIHHINVARLVGFCADGNKRGLVYEFLPKGSLQKFISSADTKDVFLGWERLQNISLGIAKGIEYLHQGCDKRILHFDIKPHNVLLDDNFTPKISDFGLAKLCSKEKSIVSMTTARGTLGYIAPEVFSRNFGNVSYKSDVYSFGMVLLEMVGGRKITDDTKENSNDVHYPQWIYNLLENEEDIKIHIEGEEDARIAKKLSVVGLWCIQWHPANRPTMKAVVQMLEGNGEKLEMPPNPFASASATRTNAARRLNLELDVISEIE 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi60g00008 618 Pfam Wall-associated receptor kinase galacturonan-binding 33 101 IPR025287 GO:0030247
Vivi60g00008 618 PANTHER RUST RESISTANCE KINASE LR10-RELATED 279 597 IPR045874 GO:0004672
Vivi60g00008 618 Gene3D Phosphorylase Kinase; domain 1 271 382 - -
Vivi60g00008 618 SMART serkin_6 308 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi60g00008 618 Gene3D Transferase(Phosphotransferase) domain 1 383 588 - -
Vivi60g00008 618 FunFam PR5-like receptor kinase 383 591 - -
Vivi60g00008 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672|GO:0006468
Vivi60g00008 618 ProSitePatterns Protein kinases ATP-binding region signature. 314 336 IPR017441 GO:0005524
Vivi60g00008 618 Pfam Protein kinase domain 310 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi60g00008 618 FunFam serine/threonine-protein kinase PBS1-like 276 382 - -
Vivi60g00008 618 SUPERFAMILY Protein kinase-like (PK-like) 293 580 IPR011009 -
Vivi60g00008 618 ProSiteProfiles Protein kinase domain profile. 308 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi60g00008 214 601 Receptor kinase-like Gene Family AT1G66910 44.656 1.53e-110 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi60g00008 Pkinase 8.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi60g00008 - - tpra:123914140 1054.66