LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi607g00003	ATGATTGAAAGTAAAGATCCTGCAATTAAGCTATTCGGCCAAAAGATTCTCGCTGAAGCTATGGATGTAGAAGAAGAAGAAAGAGATAGATATCTTAGCGAGTCTGAGAGTGAAGATGAAGAAACAACAAAGGACCATGAAGCAGAAAAAGACACTGAGAAAAGGAAAGAAGTTGATCCTACACAAAATTCTGCGGAGATCAAGAACAATAATTCAGGTAAACAGAATGCAAAAACACCATCTATAGATGAAGAAACATCAAAATCCAAAAATGAACAGAGCGATGCAGCAGCAGCAACAAACAACGACAACAGCAGTCAAGAGAAAACACTAAAGAAGCCCGACAAACTACTCCCATGTCCGCGCTGCAACAGCGCGGACACAAAATTCTGTTACTACAACAACTACAATGTCAACCAGCCCCGCTATTTCTGCAGAGCGTGTCAAAGATACTGGACGGCAGGCGGAACCATGAGGAATGTTCCGGTTGGTGCAGGGAGAAGAAAGCACAAAAACAACTCTTCATCGCATTATCGTCACATCACCGTCTCTGAGGCACTTGATGCAGCAAGAGTTTTCTCTCCTGATGAAACTCATTATGCTCCAAATTCGAAAACCAATGGTAGACTCCTTAGCTTTGGATCGGATCATCCAACAATCTGCAATCCTGCAGAGAAAAGGGGTCTCAGCGACACTCGTGACGATCATTGTTCAAGTGCATCTTCTAATACAGTTTCAAAATCTATGGAGCAAAGTGGCAAAAACATGTCACAAGAATCATTACCACAGCAAAATAGTGGTTTTGTTCCTCAAGTTCCGTGTATCACAAGCGTTCCTTGGCCTTACACTTGGAGTTCTTCCGCGATTCCCTCGCCGCAAACAATGTGTCCTCCTGGATTTCCCATGTCATTCTACCCTACTCCATTTTGGAACTGCGGTGCTCCGGGAAATTGGAATGCTCCTTGGTTTCCCTCTCATACTTCCGCTACAAGTCCAAGCTTATCGAACTCTAGCTCGAATCCTCCAACGCCTGGGAAACGCACGAGGGATCATAATGATGACGATGATGACACCACAAAACAAGACGATCTTCGAAAAGAAGAATCACCAAGACAAAGAAGTGGGAGTGTATTGGTTCCAAAAACATTGAGAATTGATGATCCAAATGAAGCTGCAAAGAGTTCTATATGGGAAACACTTGGAATCAAGAATGAAAGTGTGAGTAAGGGAGGCATGACCAAAGCTTTTCAACCAAAGAAAGATGGAAAAGAACATGTTGAAACCTCTCCAATGTTGATGGCTAACCCTGCAGCTTTGGCTAGATCACTTAACTTTCATGAAAATTCTTAA	1350	0.4281	MIESKDPAIKLFGQKILAEAMDVEEEERDRYLSESESEDEETTKDHEAEKDTEKRKEVDPTQNSAEIKNNNSGKQNAKTPSIDEETSKSKNEQSDAAAATNNDNSSQEKTLKKPDKLLPCPRCNSADTKFCYYNNYNVNQPRYFCRACQRYWTAGGTMRNVPVGAGRRKHKNNSSSHYRHITVSEALDAARVFSPDETHYAPNSKTNGRLLSFGSDHPTICNPAEKRGLSDTRDDHCSSASSNTVSKSMEQSGKNMSQESLPQQNSGFVPQVPCITSVPWPYTWSSSAIPSPQTMCPPGFPMSFYPTPFWNCGAPGNWNAPWFPSHTSATSPSLSNSSSNPPTPGKRTRDHNDDDDDTTKQDDLRKEESPRQRSGSVLVPKTLRIDDPNEAAKSSIWETLGIKNESVSKGGMTKAFQPKKDGKEHVETSPMLMANPAALARSLNFHENS	449

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi607g00003	449	Coils	Coil	21	41	-	-
	Vivi607g00003	449	MobiDBLite	consensus disorder prediction	92	107	-	-
	Vivi607g00003	449	MobiDBLite	consensus disorder prediction	235	265	-	-
	Vivi607g00003	449	MobiDBLite	consensus disorder prediction	327	345	-	-
	Vivi607g00003	449	MobiDBLite	consensus disorder prediction	20	62	-	-
	Vivi607g00003	449	MobiDBLite	consensus disorder prediction	63	80	-	-
	Vivi607g00003	449	MobiDBLite	consensus disorder prediction	20	118	-	-
	Vivi607g00003	449	PANTHER	CYCLIC DOF FACTOR 2	5	449	IPR045174	GO:0003700\|GO:0006355
	Vivi607g00003	449	MobiDBLite	consensus disorder prediction	327	386	-	-
	Vivi607g00003	449	ProSitePatterns	Zinc finger Dof-type signature.	120	156	IPR003851	GO:0003677\|GO:0006355
	Vivi607g00003	449	MobiDBLite	consensus disorder prediction	222	265	-	-
	Vivi607g00003	449	ProSiteProfiles	Zinc finger Dof-type profile.	118	172	IPR003851	GO:0003677\|GO:0006355
	Vivi607g00003	449	Pfam	Dof domain, zinc finger	116	172	IPR003851	GO:0003677\|GO:0006355
	Vivi607g00003	449	MobiDBLite	consensus disorder prediction	346	372	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi607g00003	1	447	C2C2-Dof Transcription Factor Family	AT3G47500	43.293	2.86e-102	310

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-Dof	Vivi607g00003		zf-Dof	1.1e-31	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi607g00003	-		-	gmx:778113	484.567