Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi605g00006 ATGGCCACAGAAGAACCCATTGTCGCGGTGGAATCTGTTTCCGAACCAATTGTCACCGAACCAACAATTACCGAGCCTCAGGTCCCGGAGAAGGAGGAACCTAAAGCTGAAGCAGAAAAGACGAAGAAAACCAAGGAATCAAAGCCTAAGAAAGCTTCTAAGCCACGAAACCCTGCTGCACATCCAACTTACGAAGAGATGATTAAGGATGCAATAGTGTCGCTGAAGGAGAAGAACGGTTCGAGCCAATACGCGATTGCGAAATTCATTGAAGAGAAACACAAACAGCTTCCTGCAAACTTCAAGAAGCTATTGCTTCAAAATTTGAAGAAAAAAGTTGCTTCTGGAAAGCTTGTTAAGGTTAAAGGTTCATTCAAGCTTTCTGCGGCGGCGAAGAAGCCCGCAGTTGCCAAGCCGAAGCCAAAGACAGCTGCTAAGAAGGCTGTGAAAGCTAAGCCAGCTGCTAAGCCAAAAGCTAAAGCTGTCGTCAAGCCAAAGGTTGCTTCAAAGGCCAAATCTGTAGCTGCAAAGCCCAAAAAAGACGCAGCCAAGCCCAAAACTACCGCTGCTAAGCCCAAATCTACTGTTGTCAAGACTAAAGTTGCTGCCAAGCCAAAAGCAGTTGTTAAACCGAAGTCCAAGGTGAAGCCAGCTAAGGTTGCAAAGACATCGGCTAAGACAACACCGGGAAAGAAAGTTGCCGCTGTGAAGAAAGTTGTGGCTGCAAAGAAAGCTCCTGTTAAGAGCGTGAAGGCTAAAAGCGTGAAGTCTCCAGTGAAGAAGGTTTCAGTTAAGAGAGGTGGAAGGAAATGA 813 0.4637 MATEEPIVAVESVSEPIVTEPTITEPQVPEKEEPKAEAEKTKKTKESKPKKASKPRNPAAHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKHKQLPANFKKLLLQNLKKKVASGKLVKVKGSFKLSAAAKKPAVAKPKPKTAAKKAVKAKPAAKPKAKAVVKPKVASKAKSVAAKPKKDAAKPKTTAAKPKSTVVKTKVAAKPKAVVKPKSKVKPAKVAKTSAKTTPGKKVAAVKKVVAAKKAPVKSVKAKSVKSPVKKVSVKRGGRK 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi605g00006 270 MobiDBLite consensus disorder prediction 254 270 - -
Vivi605g00006 270 SMART h15plus2 58 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi605g00006 270 SUPERFAMILY "Winged helix" DNA-binding domain 55 134 IPR036390 -
Vivi605g00006 270 CDD H15 58 128 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi605g00006 270 MobiDBLite consensus disorder prediction 1 64 - -
Vivi605g00006 270 Gene3D - 55 143 IPR036388 -
Vivi605g00006 270 PRINTS Histone H5 signature 146 160 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi605g00006 270 PRINTS Histone H5 signature 74 91 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi605g00006 270 PRINTS Histone H5 signature 181 198 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi605g00006 270 PRINTS Histone H5 signature 47 68 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi605g00006 270 PRINTS Histone H5 signature 203 222 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi605g00006 270 MobiDBLite consensus disorder prediction 205 219 - -
Vivi605g00006 270 MobiDBLite consensus disorder prediction 128 232 - -
Vivi605g00006 270 PANTHER HISTONE H1 33 226 - -
Vivi605g00006 270 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 60 129 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi605g00006 270 Pfam linker histone H1 and H5 family 61 128 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi605g00006 270 MobiDBLite consensus disorder prediction 139 165 - -
Vivi605g00006 270 MobiDBLite consensus disorder prediction 26 46 - -
Vivi605g00006 270 MobiDBLite consensus disorder prediction 245 270 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi605g00006 62 184 Single Myb Histone (SMH) Gene Family AT1G72740 30.400 8.26e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi605g00006 K11275 - psat:127122354 154.451