Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi605g00005 ATGGCCACGGAAGAACTCAAAGTCGAAACCGTTTCTCAAGTAACCGTACCCGAACCTCAAGACTCGGAGAAAAACGAACCAAAGACTCAAGCAGAGAAGACGAAGAAAGCCAAAGAATCAAAGCCGAAGAAAGCTTCCAAACCACGAAGTCCTTCTTCTCATCCTACCTACTCTGAGATGATTAAGGATGCAATAGTGTCGCTGAAGGAGAAGACTGGTTCAAGCCAATACGCGATTGCGAAATTCATTGAAGAGAAACACAAACAACTTCCTTCAAACTTCAAGAAACTATTGCTCCAGAATTTGAAGAAGAGCGTTGCTTCAGGAAAGCTTGCTAAGGTTAAAGGTTCATTCAAGATTTCACTCGCTACACCCAAACCTAAGACCAATCCAACTGCAAAGGTGAAACCATCGAAGGCTAAGTCTGCTGCAATTCCAAAAGCTAAAGCAGTTGTTAAGCCGAAGATTGCTTCGAAGGCCAAAGCTGTAACCGCCAAGCCTGAAGTTGTGGCTTCCAAGAAAAAAGCTGCTGTGAAACCGAAGCCAAAAGAGAGGCCTACAAAGGTTGCAAAGACGACTCCGGTGAAGAAAGTTGCGGTCGTGAAAAGCGTGAAGGCTAAGAGCATTAAGTCTCCAACAAAAAAGGTTTCGGTGAAGGGAGGCGGAAGAAAATGA 675 0.4459 MATEELKVETVSQVTVPEPQDSEKNEPKTQAEKTKKAKESKPKKASKPRSPSSHPTYSEMIKDAIVSLKEKTGSSQYAIAKFIEEKHKQLPSNFKKLLLQNLKKSVASGKLAKVKGSFKISLATPKPKTNPTAKVKPSKAKSAAIPKAKAVVKPKIASKAKAVTAKPEVVASKKKAAVKPKPKERPTKVAKTTPVKKVAVVKSVKAKSIKSPTKKVSVKGGGRK 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi605g00005 224 MobiDBLite consensus disorder prediction 168 193 - -
Vivi605g00005 224 PRINTS Histone H5 signature 179 196 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi605g00005 224 PRINTS Histone H5 signature 67 84 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi605g00005 224 PRINTS Histone H5 signature 40 61 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi605g00005 224 PRINTS Histone H5 signature 201 220 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi605g00005 224 PRINTS Histone H5 signature 149 163 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi605g00005 224 MobiDBLite consensus disorder prediction 1 20 - -
Vivi605g00005 224 SMART h15plus2 51 117 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi605g00005 224 MobiDBLite consensus disorder prediction 1 59 - -
Vivi605g00005 224 CDD H15 51 129 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi605g00005 224 MobiDBLite consensus disorder prediction 21 39 - -
Vivi605g00005 224 SUPERFAMILY "Winged helix" DNA-binding domain 50 132 IPR036390 -
Vivi605g00005 224 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 53 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi605g00005 224 MobiDBLite consensus disorder prediction 172 191 - -
Vivi605g00005 224 Gene3D - 48 152 IPR036388 -
Vivi605g00005 224 Pfam linker histone H1 and H5 family 54 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi605g00005 224 PANTHER HISTONE H1 28 205 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi605g00005 55 201 Single Myb Histone (SMH) Gene Family AT1G72740 27.451 2.06e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi605g00005 K11275 - vvo:131633962 294.278