Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi605g00004 ATGGCCACCGAAGAACCAATTATCGCCGTTGAACCTGTGCCTGAGCCAGCGATCGCCGAACCTCCATCCTCTGAGAAAGTGGAGGAGCCAAAGGCCGAAGCTGGGAAGACGAAGAAAACGAAGGAATCCAAACCTAAAAAAGCTTCCAAGCCACGAAACCCTGCTTCACATCCTACCTACGAAGAGATGATTAAGGACGCAATTGTTTCGTTGAAGGAGAAGAATGGTTCAAGCCAATACGCGATTGCGAAATTCATTGAAGAGAAACACAAACAGCTTCCTGCTAACTTTAAGAAGCTATTGCTCCAAAATTTGAAGAAGAACGTTGCTTCTGGAAAGCTTGCTAAGGTGAAAGGTTCATTCAAGCTTTCTGCAGCGGCTAAGAAGCCAGCAGTTGCCAAGCCGAAGGCAAAGCCAGCTGCCAAGAAGGCTGTGAAAGCTAAGCCAGCCGCTAAGCCTAAAGCTAAAGCTGTTGTCAAGCCTAAGACTGCTTCAAAGGCCAAATCTGTTACCACCAAACCCAAAGCGGCTGCCGCCAAGCCCAAAGCTGCTGCCAAGCCCAAGGCTGCTGTGAAACCTAAAGCTGCTATCAAGCCCGAGGCTGCTGTCAAGCCTAAAACTGTTGCTAGGCCCAAGGCAAAGTCTGCAAAGGTTGCGAAGACATCGACGAGGACTACACCAGGGAAGAAAGTTGCTGTTGTGAAGACCGCACCTAAGAAAGCAGCGGCTGCAAAGAAAGCTCCGGTGAAGAGTGTGAAAGCAAAGAGTGTAAAGTCCCCTGCAAAGAAGGCTTCCGGGGTGAAGAGAGGTGGAAGGAAATGA 822 0.4951 MATEEPIIAVEPVPEPAIAEPPSSEKVEEPKAEAGKTKKTKESKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKHKQLPANFKKLLLQNLKKNVASGKLAKVKGSFKLSAAAKKPAVAKPKAKPAAKKAVKAKPAAKPKAKAVVKPKTASKAKSVTTKPKAAAAKPKAAAKPKAAVKPKAAIKPEAAVKPKTVARPKAKSAKVAKTSTRTTPGKKVAVVKTAPKKAAAAKKAPVKSVKAKSVKSPAKKASGVKRGGRK 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi605g00004 273 PRINTS Histone H5 signature 142 156 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi605g00004 273 PRINTS Histone H5 signature 173 190 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi605g00004 273 PRINTS Histone H5 signature 70 87 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi605g00004 273 PRINTS Histone H5 signature 43 64 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi605g00004 273 PRINTS Histone H5 signature 195 214 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi605g00004 273 MobiDBLite consensus disorder prediction 22 40 - -
Vivi605g00004 273 SUPERFAMILY "Winged helix" DNA-binding domain 51 130 IPR036390 -
Vivi605g00004 273 PANTHER HISTONE H1 31 254 - -
Vivi605g00004 273 MobiDBLite consensus disorder prediction 124 273 - -
Vivi605g00004 273 CDD H15 54 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi605g00004 273 MobiDBLite consensus disorder prediction 1 61 - -
Vivi605g00004 273 Pfam linker histone H1 and H5 family 57 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi605g00004 273 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 56 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi605g00004 273 Gene3D - 51 136 IPR036388 -
Vivi605g00004 273 MobiDBLite consensus disorder prediction 135 161 - -
Vivi605g00004 273 SMART h15plus2 54 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi605g00004 58 136 Single Myb Histone (SMH) Gene Family AT1G72740 35.000 1.25e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi605g00004 K11275 - psat:127122354 158.688