Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi605g00003 ATGGCCACCGAAGAACCAACTATCGCCGTTGAACCTGTGCCTGAGCCAGCGATCGCCGAACCTCCAGCCTCTGAGAAAGTGGAGGAACCAAAGGCTGAAGCTGGGAAGACGAAGAAAACGAAGGAACCCAAACCTAAGAAAGCTTCCAAGCCACGAAACTCTGCTTCACATCCTACTTACGAAGAGATGATTAAGGATGCAATTGTATCGTTGAAGGAGAAGAATGGTTCAAGCCAATACGCGATTGCGAAATTCATCGAAGAGAAACACAAACAACTTCCCGCTAACTTCAAGAAGCTATTGCTCCAAAATCTGAAGAAAAAAGTTGCTTCTGGAAAGCTCGTTAAAGTTAAAGGCTCATTCAAGCTCTCTGCAACGGCGAAGAAGCCGGTAGTTGCCAAACCGAAGACAAAGCCAGCAGCTGCAAAGGTGAAGTCGGTGAAGGCTAAGACAGCCGCTAAGCCAAAAGCTAAAGCTGTTGTTAAGCCCAAGGCTGCTTCAAAGGCCAAATCTGTTGCTACCAAGCCCAAAGCTGCTGCTGCCAAGCCCAAAACTACAGTCAAGCCTAAAGCTGCCATCAAGCCCAAAGCTGCTGCTAAGGCTAAAACTGTTGCTAAGCCCAAAGCAGCTGCGAAACCAAAGCCCGCAAAGGTTGCAAAGACATCTACGAAGACTACACCAGGAAAGAAAGTTGCTGTTGCGAAGCCTGCGCCTAAGAAAGCTCCTGTGAAGAGTGTTACGTCTCCAGCCAAGAAGGCTTCCGGTGTGAAGAGAGGGGGAAGGAAATGA 789 0.4854 MATEEPTIAVEPVPEPAIAEPPASEKVEEPKAEAGKTKKTKEPKPKKASKPRNSASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKHKQLPANFKKLLLQNLKKKVASGKLVKVKGSFKLSATAKKPVVAKPKTKPAAAKVKSVKAKTAAKPKAKAVVKPKAASKAKSVATKPKAAAAKPKTTVKPKAAIKPKAAAKAKTVAKPKAAAKPKPAKVAKTSTKTTPGKKVAVAKPAPKKAPVKSVTSPAKKASGVKRGGRK 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi605g00003 262 MobiDBLite consensus disorder prediction 22 40 - -
Vivi605g00003 262 Pfam linker histone H1 and H5 family 57 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi605g00003 262 CDD H15 54 136 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi605g00003 262 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 56 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi605g00003 262 PANTHER HISTONE H1 31 244 - -
Vivi605g00003 262 Gene3D - 52 132 IPR036388 -
Vivi605g00003 262 MobiDBLite consensus disorder prediction 1 61 - -
Vivi605g00003 262 SUPERFAMILY "Winged helix" DNA-binding domain 53 130 IPR036390 -
Vivi605g00003 262 SMART h15plus2 54 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi605g00003 262 MobiDBLite consensus disorder prediction 158 262 - -
Vivi605g00003 262 PRINTS Histone H5 signature 175 192 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi605g00003 262 PRINTS Histone H5 signature 43 64 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi605g00003 262 PRINTS Histone H5 signature 70 87 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi605g00003 262 PRINTS Histone H5 signature 144 158 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vivi605g00003 262 PRINTS Histone H5 signature 197 216 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi605g00003 53 156 Single Myb Histone (SMH) Gene Family AT1G72740 29.907 4.03e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi605g00003 K11275 - psat:127122354 171.014