Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi604g00036 ATGGATCATCAAGGTCATGGCCAAAACCCTGCTATGGGAGTTGTTGGTAGTGGACAAATGGCTCCATATGGTTCTAATCCATATCAGCCCAACCATATAACTGGGTCACCTGGGATGGTTGTTCCCTCTGTTGGGAATATTCAGCCTGGTGTTCAACCAGACGGAACTCAGATGGGACAGCATCAACTTGCTTATCAGCATATTCATCAGCAACAACAGCAGCAGCAACAGCAACAACTCCAGACCTTTTGGGGAACTCAATATCAAGAAATCGAGAAGGTTACTGATTTCAAAAACCACAGCCTTCCCTTGGCTAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTGAAGATGATATCAGCTGAGGCGCCGGTTGTATTTGCAAGGGCGTGCGAAATGTTCATACTAGAGTTAACCTTGCGTTCTTGGACTCACACTGAAGAGAACAAAAGGCGAACACTTCAAAAAAATGATATTGCCGCAGCCATCACCGGAACTGATATCTTTGATTTCTTGGTTGATATTGTGCCGCGGGAGGACTTGAAAGATGAAGTGCTTGCATCAATACCAAGAGGGCCAATGCCTGTTGGAGGGCCTGCTGATGGAATTCCTTATGGCTATATGCCACCACATCACGCACAGCAAGCTGGAAATCCTGGTCTCATGATGCATAATCCGAACATGTATGCTCCACAGTCTCATCCATACATGGCACCTCAAATGTGGCCTCAACCACCCGAGCAACCACCGTCGCCTTCAGATCATTAG 771 0.4669 MDHQGHGQNPAMGVVGSGQMAPYGSNPYQPNHITGSPGMVVPSVGNIQPGVQPDGTQMGQHQLAYQHIHQQQQQQQQQQLQTFWGTQYQEIEKVTDFKNHSLPLARIKKIMKADEDVKMISAEAPVVFARACEMFILELTLRSWTHTEENKRRTLQKNDIAAAITGTDIFDFLVDIVPREDLKDEVLASIPRGPMPVGGPADGIPYGYMPPHHAQQAGNPGLMMHNPNMYAPQSHPYMAPQMWPQPPEQPPSPSDH 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi604g00036 256 MobiDBLite consensus disorder prediction 233 256 - -
Vivi604g00036 256 MobiDBLite consensus disorder prediction 239 256 - -
Vivi604g00036 256 SUPERFAMILY Histone-fold 69 173 IPR009072 GO:0046982
Vivi604g00036 256 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 67 202 - -
Vivi604g00036 256 FunFam Nuclear transcription factor Y subunit gamma 67 179 - -
Vivi604g00036 256 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Vivi604g00036 256 Pfam Core histone H2A/H2B/H3/H4 62 164 IPR007125 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi604g00036 1 243 CCAAT-HAP5 Transcription Factor Family AT1G08970 63.525 1.51e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vivi604g00036 Histone 4.2e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi604g00036 K08066 - gmx:100527803 351.288