Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi604g00011 ATGGCACCACCAAGGAAATCTAGAAGTGTGAATAAGCGGTTTACAAATACAAATGATATTTCTCCCGAGAAAGATGGAGTTGGATCAAGTAAAAACAAGCACAGGAAGAAGAAATTGTCTAATAAATTAGGATCTCAGTGGAGCAAGGAGGAACTTGAGCAATTCTATGAAGCATACAGAAAGTATGGGACAGATTGGAAGAAGGTGGCTGCTGCTGTACGTAATAGATCCATTGAAATGGTGGAAGCTCTTTACAATATGAATCGGGCATACCTATCTCTACCAGAGGGCATGGCTTCTGTTGTGGGCCTCATTGCAATGATGACAGATCATTATAATGTCCTGGAAGAGAGTGATAGTGAAAAGGAGAGCAATGATGCACCAGGATCTCGAAAACCTGTGAAACGGAAGCGTGAAAAAGTTCAGCTTAGTGTTTCAAAGGATCCTGTCCAGTCTCAGTCTGTAACTTCCAGTGATGGTTGCCTCTCTCTACTGAAGAAAAGGCGCATTGATGGTATCCAGCCTCGTGCAGTTGGGAAGAGGACACCCCGAGTTCCAGTTTACCACTCTTACAAGAAAGATGATAGGGAGAATTTTGTTTCACCTAATAAAAGAAGTTTGAAGTCCACTGCTGATGCTAATGATGACGAAGTTGAACATGTAGCTTTGACATTAACCAGGGCTTCACAAAGAGGAGACTCTCCCCGTTCTCAAACACCACATAGGAGAGCAGGGCAGAAGTCCTCTGTTGTTCAGAGCCGGGAAAAAATGCAGCAAGTATCACAAACGACTCGTGCTAAGTACCACAATGTTCCCGTGGATGAAGAGTTTGTGGAAGGTAGTCTAGAAAGCAGGGGAGCTGAAAATGGAGAATATGCTAGAGATACTAGTTCCTTGATAGATATGGAAGGAACGAGCACCGCTGGAGTTCTTCTGAAGAAAGGAAAATTTTATAGAAAAAAAGAGAAAGTGGAAAATATTGGAAATGATCAGCTTGATGATGGAGGAGAAGCATGCAGCGGCACTGAAGAAGGACTTAGTTTTAGGTCTTTGAAAGAAAATAAATTGGAGGGTACTAATGAAAGGCTTGAGCAATTCTCTCCAACAAGTCAGCGGAAAAAAAGCCAAAAGCTCTTTTTTGGAGATGAAATCCACGCCTTGAATGCTTTGCAAACTTTGGCCGATCTATCTCTAATGATGCCGACATCTAAAGCAGAATCTGAATCACCTGTCCAGTTGAAGGGAGAAAGAAAGACTGTTGTTAAAGATGATAAGTCTGCTTTACCTGAAGCAACTTCAACAAGTCATAAGAGAAATAAAGTTAGACTCCGTGGGGTCTCTGTAGCCGACACTTCAACGTCCAAAAAATCTAAACTCGGAAAGGATATAGCAAATGATACCAATGCTCTTTCTGAATCAAAAGAGCAGATTCCGTTTGCTGATAAAACATGGAAAAGAAAGCACAAGTCCACTCTTTCAAAGGTTGCGGATGACGGGAACAAAACGGCGATTAAAGGAAAACACGCTGATCAGGTTTTTGCCTCACCAAAACAATTGAAGATGGTCAAACCATCAGAAGTTGTCTCGCGTGGTGATCAGAAAGGTTTAGCAATATCAACCGCTGAAATTCCACTTTTGAATGAAATTAGTTCACCAATCAAACAAAGAAGTAGACGCAAGATGATTTTTCAGAGACCATCCATGCCAAAAGAGAAGTCTTTTGAGAATATATTGAAAAGCCAACCTAATAATTACTCTACCCAAAAGGAAAAGCTTTCCAGTTGCCTGTCATCTTCTTTGGTTCGCAGATGGTTTACTTTTGAATGGTTTTATAGTGCACTTGATTATCCATGGTTTGCCAAAAGAGAATTTGTGGAGTACTTAAACCATGTGGGGCTGGGGAATATCCCAAGGCTAACTCGTGTTGAGTGGAGTGTCATAAAAAGTTCCCTTGGCAAACCACGCAGGTTTTCTGAACATTTTTTACATGAAGAAAGACAAAAACTTGAACAGTATCGAGAATCAGTGAGGAAACATTATTCTGAGCTGCGGACTGGTGTCAGAGATGGACTTCCGACAGATTTAGCGAGACCATTATATGTTGGACAACGAGTAATTGCCATTCACCCCAAAACAAGAGAGATTCATGATGGTAGTGTGCTTACTGTTGACCATGACAAGTGCAGGATTCAGTTCGACCGTCCTGAGTTAGGAGTTGAATTCATCATGGACATCGATTGCATGCCTTTGAATACATTAGATAATATGCCAGAAGCTTTGAGGAGGCAGATTGGTGCCAGAAAAGCCTCTTTTATAACTAAAGAACCACAGATTAATGGAAATTCAAGTGTTGGGGGATGTGAAATGCATTCCTCACCTGTGAAGGTACATCTCTCTTCAAGTGCTTCAGTAAAGCAAGGAAAGGCGGATGCTAACCATGTCACTTCCCAGACCAATATTGATAACCTCTGCGCTCAAGCTGCTTGTGCTCAACCGTCTCAAGTGATGCAACATCAAGCTAAAGAAGCTGATATACATGCACTTTCTGAACTAAAGCGTGCTCTAGATAAAAAGGAGACAGTGCTAATAGAACTTCGAAATGCAAATAATGGCATATTGGAAAACCAAAATGGTATAGAATGTTTAAAAGATCCCGAAGGTTTCAAGAAGCATTATGCCACGGTACTTGTAGAGCTAAAGGAAGCCAGTGGACAGGTTTCTGATACCATGCTTCAATTGAGGCAACGCAACACCTACACGGACAACTCTTTCCCACCATGGATGAAGCCCAAAGCTGATTTTGAAGTTCATGATGATCTTCCTAGTGTGTTGGATAATTCTATGACACAAGAGTCTAGGTCAACTGTCATTGAAATTGTTAAAGGATCTAGGCTACGGGCACATGCAATGCTGGATGCTGCATTTCAGGCATGGTCTCAAGCCACAAAGGAAGGTAAAGATGCTATTACGAAGATTGGACAGGCATTGGATTCTATTGATTATCAACAGTTATCCTCTAAGTACAGGTTGCCTGTGATAAGGTCTCAAGATCAAGTGAATGGCAGTTTTTATCAGCATAATCAATCAACTTGCAAAGTATCTGAACCTTTACTTAATGATGCATCTGGTCCCAAACTGCATAAAGATTCTGACGAAGTTGATTTTGAAATACCGTCAGAGCTCATCACTTCATGTGTTGCTACATTAACCATGATACAGAGTTGTACAGAACGGCAATACCCTCCAGCAGATGTGGCTCGAATATTAGATTCTGCTGTTACCAGCTTGCAACCATGCGATCCTCGAAACCTTCCTATTTACAGAGAAATTCAAATGTGCATGGGAAGAATTAAGACCCAGATTTTAGCTCTCATCCCTACTTAG 3384 0.4134 MAPPRKSRSVNKRFTNTNDISPEKDGVGSSKNKHRKKKLSNKLGSQWSKEELEQFYEAYRKYGTDWKKVAAAVRNRSIEMVEALYNMNRAYLSLPEGMASVVGLIAMMTDHYNVLEESDSEKESNDAPGSRKPVKRKREKVQLSVSKDPVQSQSVTSSDGCLSLLKKRRIDGIQPRAVGKRTPRVPVYHSYKKDDRENFVSPNKRSLKSTADANDDEVEHVALTLTRASQRGDSPRSQTPHRRAGQKSSVVQSREKMQQVSQTTRAKYHNVPVDEEFVEGSLESRGAENGEYARDTSSLIDMEGTSTAGVLLKKGKFYRKKEKVENIGNDQLDDGGEACSGTEEGLSFRSLKENKLEGTNERLEQFSPTSQRKKSQKLFFGDEIHALNALQTLADLSLMMPTSKAESESPVQLKGERKTVVKDDKSALPEATSTSHKRNKVRLRGVSVADTSTSKKSKLGKDIANDTNALSESKEQIPFADKTWKRKHKSTLSKVADDGNKTAIKGKHADQVFASPKQLKMVKPSEVVSRGDQKGLAISTAEIPLLNEISSPIKQRSRRKMIFQRPSMPKEKSFENILKSQPNNYSTQKEKLSSCLSSSLVRRWFTFEWFYSALDYPWFAKREFVEYLNHVGLGNIPRLTRVEWSVIKSSLGKPRRFSEHFLHEERQKLEQYRESVRKHYSELRTGVRDGLPTDLARPLYVGQRVIAIHPKTREIHDGSVLTVDHDKCRIQFDRPELGVEFIMDIDCMPLNTLDNMPEALRRQIGARKASFITKEPQINGNSSVGGCEMHSSPVKVHLSSSASVKQGKADANHVTSQTNIDNLCAQAACAQPSQVMQHQAKEADIHALSELKRALDKKETVLIELRNANNGILENQNGIECLKDPEGFKKHYATVLVELKEASGQVSDTMLQLRQRNTYTDNSFPPWMKPKADFEVHDDLPSVLDNSMTQESRSTVIEIVKGSRLRAHAMLDAAFQAWSQATKEGKDAITKIGQALDSIDYQQLSSKYRLPVIRSQDQVNGSFYQHNQSTCKVSEPLLNDASGPKLHKDSDEVDFEIPSELITSCVATLTMIQSCTERQYPPADVARILDSAVTSLQPCDPRNLPIYREIQMCMGRIKTQILALIPT 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi604g00011 1127 MobiDBLite consensus disorder prediction 227 266 - -
Vivi604g00011 1127 MobiDBLite consensus disorder prediction 9 25 - -
Vivi604g00011 1127 MobiDBLite consensus disorder prediction 145 159 - -
Vivi604g00011 1127 MobiDBLite consensus disorder prediction 116 159 - -
Vivi604g00011 1127 SUPERFAMILY Homeodomain-like 41 90 IPR009057 -
Vivi604g00011 1127 Coils Coil 848 868 - -
Vivi604g00011 1127 ProSiteProfiles SANT domain profile. 42 77 IPR017884 -
Vivi604g00011 1127 SMART sant 43 91 IPR001005 -
Vivi604g00011 1127 MobiDBLite consensus disorder prediction 116 144 - -
Vivi604g00011 1127 MobiDBLite consensus disorder prediction 187 202 - -
Vivi604g00011 1127 SMART DIRP_2 610 711 IPR033471 -
Vivi604g00011 1127 Coils Coil 662 682 - -
Vivi604g00011 1127 MobiDBLite consensus disorder prediction 410 437 - -
Vivi604g00011 1127 Gene3D - 5 100 - -
Vivi604g00011 1127 Pfam DIRP 609 710 IPR033471 -
Vivi604g00011 1127 ProSiteProfiles Myb-like domain profile. 45 77 IPR001005 -
Vivi604g00011 1127 MobiDBLite consensus disorder prediction 1 43 - -
Vivi604g00011 1127 MobiDBLite consensus disorder prediction 404 437 - -
Vivi604g00011 1127 Pfam Myb-like DNA-binding domain 45 82 IPR001005 -
Vivi604g00011 1127 MobiDBLite consensus disorder prediction 174 266 - -
Vivi604g00011 1127 CDD SANT 47 81 IPR001005 -
Vivi604g00011 1127 PANTHER LIN-9 1 1127 IPR010561 GO:0006351|GO:0017053
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi604g00011 DIRP 1.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi604g00011 - - gmx:100816217 1589.7