Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi604g00008 ATGGCACCACCAAGGAAATCTAGAAGTGTGAATAAGCGGTTTACAAATACAAATGATATTTCTCCCGAGAAAGATGGAGTTGGATCAAGTAAAAACAAGCACAGGAAGAAGAAATTGTCTAATAAATTAGGATCTCAGTGGAGCAAGGAGGAACTTGAGCAATTCTATGAAGCATACAGAAAGTATGGGACAGATTGGAAGAAGGTGGCTGCTGCTGTACGTAATAGATCCATTGAAATGGTGGAAGCTCTTTACAATATGAATCGGGCATACCTATCTCTACCAGAGGGCATGGCTTCTGTTGTGGGCCTCATTGCAATGATGACAGATCATTATAATGTCCTGGAAGAGAGTGATAGTGAAAAGGAGAGCAATGATGCACCAGGATCTCGAAAACCTGTGAAACGGAAGCGTGAAAAAGTTCAGCTTAGTGTTTCAAAGGATCCTGTCCAGTCTCAGTCTGTAACTTCCAGTGATGGTTGCCTCTCTCTACTGAAGAAAAGGCGCATTGATGGTATCCAGCCTCGTGCAGTTGGGAAGAGGACACCCCGAGTTCCAGTTTACCACTCTTACAAGAAAGATGATAGGGAGAATTTTGTTTCACCTAATAAAAGAAGTTTGAAGTCCACTGCTGATGCTAATGATGACGAAGTTGAACATGTAGCTTTGACATTAACCAGGGCTTCACAAAGAGGAGACTCTCCCCGTTCTCAAACACCACATAGGAGAGCAGGGCAGAAGTCCTCTGTTGTTCAGAGCCGGGAAAAAATGCAAGTATCACAAACGACTCGTGCTAAGTACCACAATGTTCCCGTGGATGAAGAGTTTGTGGAAGGTAGTCTAGAAAGCAGGGGAGCTGAAAATGGAGAATATGCTAGAGATACTAGTTCCTTGATAGATATGGAAGGAACGAGCACCGCTGGAGTTCTTCTGAAGAAAGGAAAATTTTATAGAAAAAAAGAGAAAGTGGAAAATATTGGAAATGATCAGCTTGATGATGGAGGAGAAGCATGCAGCGGCACTGAAGAAGGACTTAGTTTTAGGTCTTTGAAAGAAAATAAATTGGAGGGTACTAATGAAAGGCTTGAGCAATTCTCTCCAACAAGTCAGCGGAAAAAAAGCCAAAAGCTCTTTTTTGGAGATGAAATCCACGCCTTGAATGCTTTGCAAACTTTGGCCGATCTATCTCTAATGATGCCGACATCTAAAGCAGAATCTGAATCACCTGTCCAGTTGAAGGGAGAAAGAAAGACTGTTGTTAAAGATGATAAGTCTGCTTTACCTGAAGCAACTTCAACAAGTCATAAGAGAAATAAAGTTAGACTCCGTGGGGTCTCTGTAGCCGACACTTCAACGTCCAAAAAATCTAAACTCGGAAAGGATATAGCAAATGATACCAATGCTCTTTCTGAATCAAAAGAGCAGATTCCGTTTGCTGATAAAACATGGAAAAGAAAGCACAAGTCCACTCTTTCAAAGGTTGCGGATGACGGGAACAAAACGGCGATTAAAGGAAAACACGCTGATCAGGTTTTTGCCTCACCAAAACAATTGAAGATGGTCAAACCATCAGAAGTTGTCTCGCGTGGTGATCAGAAAGGTTTAGCAATATCAACCGCTGAAATTCCACTTTTGAATGAAATTAGTTCACCAATCAAACAAAGAAGTAGACGCAAGATGATTTTTCAGAGACCATCCATGCCAAAAGAGAAGTCTTTTGAGAATATATTGAAAAGCCAACCTAATAATTACTCTACCCAAAAGGAAAAGCTTTCCAGTTGCCTGTCATCTTCTTTGGTTCGCAGATGGTTTACTTTTGAATGGTTTTATAGTGCACTTGATTATCCATGGTTTGCCAAAAGAGAATTTGTGGAGTACTTAAACCATGTGGGGCTGGGGAATATCCCAAGGCTAACTCGTGTTGAGTGGAGTGTCATAAAAAGTTCCCTTGGCAAACCACGCAGGTTTTCTGAACATTTTTTACATGAAGAAAGACAAAAACTTGAACAGTATCGAGAATCAGTGAGGAAACATTATTCTGAGCTGCGGACTGGTGTCAGAGATGGACTTCCGACAGATTTAGCGAGACCATTATATGTTGGACAACGAGTAATTGCCATTCACCCCAAAACAAGAGAGATTCATGATGGTAGTGTGCTTACTGTTGACCATGACAAGTGCAGGATTCAGTTCGACCGTCCTGAGTTAGGAGTTGAATTCATCATGGACATCGATTGCATGCCTTTGAATACATTAGATAATATGCCAGAAGCTTTGAGGAGGCAGATTGGTGCCAGAAAAGCCTCTTTTATAACTAAAGAACCACAGATTAATGGAAATTCAAGTGTTGGGGGATGTGAAATGCATTCCTCACCTGTGAAGGTACATCTCTCTTCAAGTGCTTCAGTAAAGCAAGGAAAGGCGGATGCTAACCATGTCACTTCCCAGACCAATATTGATAACCTCTGCGCTCAAGCTGCTTGTGCTCAACCGTCTCAAGTGATGCAACATCAAGCTAAAGAAGCTGATATACATGCACTTTCTGAACTAAAGCGTGCTCTAGATAAAAAGGAGACAGTGCTAATAGAACTTCGAAATGCAAATAATGGCATATTGGAAAACCAAAATGGTATAGAATGTTTAAAAGATCCCGAAGGTTTCAAGAAGCATTATGCCACGGTACTTGTAGAGCTAAAGGAAGCCAGTGGACAGGTTTCTGATACCATGCTTCAATTGAGGCAACGCAACACCTACACGGACAACTCTTTCCCACCATGGATGAAGCCCAAAGCTGATTTTGAAGTTCATGATGATCTTCCTAGTGTGTTGGATAATTCTATGACACAAGAGTCTAGGTCAACTGTCATTGAAATTGTTAAAGGATCTAGGCTACGGGCACATGCAATGCTGGATGCTGCATTTCAGGCATGGTCTCAAGCCACAAAGGAAGGTAAAGATGCTATTACGAAGATTGGACAGGCATTGGATTCTATTGATTATCAACAGTTATCCTCTAAGTACAGGTTGCCTGTGATAAGGTCTCAAGATCAAGTGAATGGCAGTTTTTATCAGCATAATCAATCAACTTGCAAAGTATCTGAACCTTTACTTAATGATGCATCTGGTCCCAAACTGCATAAAGATTCTGACGAAGTTGATTTTGAAATACCGTCAGAGCTCATCACTTCATGTGTTGCTACATTAACCATGATACAGAGTTGTACAGAACGGCAATACCCTCCAGCAGATGTGGCTCGAATATTAGATTCTGCTGTTACCAGCTTGCAACCATGCGATCCTCGAAACCTTCCTATTTACAGAGAAATTCAAATGTGCATGGGAAGAATTAAGACCCAGATTTTAGCTCTCATCCCTACTTAG 3381 0.4132 MAPPRKSRSVNKRFTNTNDISPEKDGVGSSKNKHRKKKLSNKLGSQWSKEELEQFYEAYRKYGTDWKKVAAAVRNRSIEMVEALYNMNRAYLSLPEGMASVVGLIAMMTDHYNVLEESDSEKESNDAPGSRKPVKRKREKVQLSVSKDPVQSQSVTSSDGCLSLLKKRRIDGIQPRAVGKRTPRVPVYHSYKKDDRENFVSPNKRSLKSTADANDDEVEHVALTLTRASQRGDSPRSQTPHRRAGQKSSVVQSREKMQVSQTTRAKYHNVPVDEEFVEGSLESRGAENGEYARDTSSLIDMEGTSTAGVLLKKGKFYRKKEKVENIGNDQLDDGGEACSGTEEGLSFRSLKENKLEGTNERLEQFSPTSQRKKSQKLFFGDEIHALNALQTLADLSLMMPTSKAESESPVQLKGERKTVVKDDKSALPEATSTSHKRNKVRLRGVSVADTSTSKKSKLGKDIANDTNALSESKEQIPFADKTWKRKHKSTLSKVADDGNKTAIKGKHADQVFASPKQLKMVKPSEVVSRGDQKGLAISTAEIPLLNEISSPIKQRSRRKMIFQRPSMPKEKSFENILKSQPNNYSTQKEKLSSCLSSSLVRRWFTFEWFYSALDYPWFAKREFVEYLNHVGLGNIPRLTRVEWSVIKSSLGKPRRFSEHFLHEERQKLEQYRESVRKHYSELRTGVRDGLPTDLARPLYVGQRVIAIHPKTREIHDGSVLTVDHDKCRIQFDRPELGVEFIMDIDCMPLNTLDNMPEALRRQIGARKASFITKEPQINGNSSVGGCEMHSSPVKVHLSSSASVKQGKADANHVTSQTNIDNLCAQAACAQPSQVMQHQAKEADIHALSELKRALDKKETVLIELRNANNGILENQNGIECLKDPEGFKKHYATVLVELKEASGQVSDTMLQLRQRNTYTDNSFPPWMKPKADFEVHDDLPSVLDNSMTQESRSTVIEIVKGSRLRAHAMLDAAFQAWSQATKEGKDAITKIGQALDSIDYQQLSSKYRLPVIRSQDQVNGSFYQHNQSTCKVSEPLLNDASGPKLHKDSDEVDFEIPSELITSCVATLTMIQSCTERQYPPADVARILDSAVTSLQPCDPRNLPIYREIQMCMGRIKTQILALIPT 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi604g00008 1126 MobiDBLite consensus disorder prediction 227 266 - -
Vivi604g00008 1126 MobiDBLite consensus disorder prediction 9 25 - -
Vivi604g00008 1126 PANTHER LIN-9 1 1126 IPR010561 GO:0006351|GO:0017053
Vivi604g00008 1126 MobiDBLite consensus disorder prediction 116 159 - -
Vivi604g00008 1126 MobiDBLite consensus disorder prediction 145 159 - -
Vivi604g00008 1126 SUPERFAMILY Homeodomain-like 41 90 IPR009057 -
Vivi604g00008 1126 Coils Coil 661 681 - -
Vivi604g00008 1126 MobiDBLite consensus disorder prediction 193 266 - -
Vivi604g00008 1126 ProSiteProfiles SANT domain profile. 42 77 IPR017884 -
Vivi604g00008 1126 SMART sant 43 91 IPR001005 -
Vivi604g00008 1126 MobiDBLite consensus disorder prediction 116 144 - -
Vivi604g00008 1126 MobiDBLite consensus disorder prediction 409 436 - -
Vivi604g00008 1126 MobiDBLite consensus disorder prediction 403 436 - -
Vivi604g00008 1126 Pfam DIRP 608 709 IPR033471 -
Vivi604g00008 1126 Coils Coil 847 867 - -
Vivi604g00008 1126 SMART DIRP_2 609 710 IPR033471 -
Vivi604g00008 1126 Gene3D - 5 100 - -
Vivi604g00008 1126 ProSiteProfiles Myb-like domain profile. 45 77 IPR001005 -
Vivi604g00008 1126 MobiDBLite consensus disorder prediction 1 43 - -
Vivi604g00008 1126 Pfam Myb-like DNA-binding domain 45 82 IPR001005 -
Vivi604g00008 1126 CDD SANT 47 81 IPR001005 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi604g00008 DIRP 1.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi604g00008 - - gmx:100816217 1585.85