Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi600g00008 ATGAGCCGAAAGTTTTCCCCCATTAAGGATGTCAACGATTCAAAAGAAACATGGAGATTGGCCGTTCGAGTTGTTGATTTTTGGAGTGTTATCAACAGCAAGGGTAAGGAGCATCTGGAGATGGTTATAATGGACGTATCGGGTGATAGGATACAAGTTTTGATTCGTTCTAACCACACACCAAAATGGAAAGCACGAATACGCGAAAACATGTCTTGCATAATCAACAATGGAACTGTTTATGAAAACGATTTTCAGTGGAAGCTTTGTGATCACGACAAGAAGTTTGTGTTTATTGGTGGTACAACTGTCAAGGAAGTTGATATTCAGAACCTTCCTCCCAAAAGATTTTTTTTCAAAGACTTTACTGATATTCTTGGAGGAAATTGTGAGATGAACCGACTTGAAGATATCATTGGTGTGGTTCAGGAAATCAACAATTTTCAATACAACAATTCTGGAAAAAAGTCATTTGTTTCACTGAGTCTTAAAGACTTGAAAGGAGTCATTGTTAACTGCACATTATGGGAGAGCTACGGAACAAAATTTTTGGACTTCTACCACGACGAAAAAAACAGTGGTGCTATTGTAATAATACTAACTCATGCAATGATAAAGGAATCACAAGTCTCAAATGGATGGAGTGGATCTAAGTTGCTTATTAACGAAGACATTCCAGAGATAACTGAGTATTTATCAAAGTTACCGTCAAATGAGCAGACTGAAAAGCCTTCGCAGTCCTCGAAGGGAATGTCTCTTTGGTCTGGTGCCTCTCAATTCACCCCAGTCGAAAGTTTCGTTCATAAGGCCAAGTGTATATCTCTCAGTGAACTTTGCAAGGTGAAACAGGACATGTTATGCGTTACTGTTGGAACAACTCAAAGGTTTTTTGTCTCAAAACACGGTTGGTTTTATTATGGGTGTACTAAATGTTCTTTAAAGGCATCTGATGTGAACAATCCATACAAATGTTCATGTGGACAGAATGTAGAACATGCCATACCAAGGTATCGAGTTGACATATATGTAGTTGATGGTGATTCCAAATTTCGCTTTGTGTTTTGGGACACTGACTGTGCCGACATTATTGGAAAGTCTGCTGATAGTATTTATAAAGCAATGCTTGAGGAAGGTGACGACGACCCAATGATATATCCAGATGAACTTGACATGCTACTTGGTAAAAAGATGGCGTTTAGGGCTAAAGTTCAGCCAACATTTGGCCAAGCATCTGTTTGGAAACTTTCTTATGATGAAGAGTTTGTAAAGGAAATTGAGAAAGATTATATTACTGATGAAGGAGATAGCAAATCTTTAAACCAAAACCCAGTTGTTGATCGTGTCGATGAATCCATTGAGTCGTTGTCAGCATATGGAGAAAATGATCCTGATAAAATTGTGACCAATACTCCATCCAAAGGAAGTCCTGTTAATCTTGATGCTGTAGATTCTGAATTACAAGCGTATGCTACTACCCAGCTCTCAGGAACCAAGCCTGCAAAGAAAGTTAAGATTGAATCTGATGCATGA 1530 0.3843 MSRKFSPIKDVNDSKETWRLAVRVVDFWSVINSKGKEHLEMVIMDVSGDRIQVLIRSNHTPKWKARIRENMSCIINNGTVYENDFQWKLCDHDKKFVFIGGTTVKEVDIQNLPPKRFFFKDFTDILGGNCEMNRLEDIIGVVQEINNFQYNNSGKKSFVSLSLKDLKGVIVNCTLWESYGTKFLDFYHDEKNSGAIVIILTHAMIKESQVSNGWSGSKLLINEDIPEITEYLSKLPSNEQTEKPSQSSKGMSLWSGASQFTPVESFVHKAKCISLSELCKVKQDMLCVTVGTTQRFFVSKHGWFYYGCTKCSLKASDVNNPYKCSCGQNVEHAIPRYRVDIYVVDGDSKFRFVFWDTDCADIIGKSADSIYKAMLEEGDDDPMIYPDELDMLLGKKMAFRAKVQPTFGQASVWKLSYDEEFVKEIEKDYITDEGDSKSLNQNPVVDRVDESIESLSAYGENDPDKIVTNTPSKGSPVNLDAVDSELQAYATTQLSGTKPAKKVKIESDA 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi600g00008 509 PANTHER OS03G0429900 PROTEIN 5 503 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi600g00008 509 Gene3D - 2 106 IPR012340 -
Vivi600g00008 509 Gene3D - 110 246 IPR012340 -
Vivi600g00008 509 MobiDBLite consensus disorder prediction 463 477 - -
Vivi600g00008 509 MobiDBLite consensus disorder prediction 459 478 - -
Vivi600g00008 509 Gene3D - 265 427 IPR012340 -
Vivi600g00008 509 SUPERFAMILY Nucleic acid-binding proteins 119 241 IPR012340 -
Vivi600g00008 509 Pfam Domain of unknown function DUF223 40 126 IPR003871 -
Vivi600g00008 509 CDD RPA1_DBD_B_like 137 231 - -
Vivi600g00008 509 SUPERFAMILY Nucleic acid-binding proteins 4 107 IPR012340 -
Vivi600g00008 509 CDD RPA1_DBD_A_like 19 104 - -
Vivi600g00008 509 SUPERFAMILY Nucleic acid-binding proteins 282 406 IPR012340 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi600g00008 1 379 Core DNA Replication Machinery Family AT5G08020 22.693 1.50e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi600g00008 - - vvo:131659518 796.193