Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06671 ATGCAAACTCCATTTTCTAATCATATGGATAGACTCTTATTCAATTGTTTATTTGCATACTTTCTGTTTTTTTCTTTCTTGTTTGTGCATGGCAAAGAATTATCATGCAATCAAACACCATACCCTCAAGTGTGTAACCATTACATTGGAACCACTAATACACTATCAACCCTACATTCTTCTTCCTTCCATGATATTGCCATTGAGGTTACCATGAACCAAGCTATTGAAGCATACAAACTTGTGTCAACCATGGATTTGAATAATTTCAAAGACAATAGAGCCAAGTCAGCATGGCAAGATTGTGTAGAACTTTATGCGGATACAATTTATCAACTTAATCGCTCCATAAACTCAAATAATTTAGATGACAAGTTAACTTGGCAAAGTGCTTCCATTACCAATCATCAAACTTGTCAAAATGGTTTCATTGATTTCAACCTTCCTTCTCACTTAAACTACTTTCCTTCCATCTTAACCAACTTCACTAAACTGCTTAGCAACTCCTTGTCCATTAGCAACACTTTAGCCTCTTCATCATTGTCTAATACTAAACAAAATGGAGGAAGACGGTTGTTATCGGATAAATTCCCCCATTGGCTTTCAGGTTCAGATAGAAAACTTTTGCAATCAACACCAAGTGCTGATATTGTGGTGGCACAAGATGGAAGTGGAAACTATAAGACAATATCAGAAGGTGTAGCTGCTGCTAAAGGAAGTGGAAAAGGAAGAGTTGTTATTCATGTGAAAGCAGGTGTATATAAAGAGAATATTGATATCAAGAAAACAGTGAAAAACATAATGATATTTGGAGATGGAATGGATTCCACAATTGTTACCGGTAATCATAACGCTCAAGATGGTTCTACAACTTTTCGTTCAGCCACTTTTGCTGTTATGGGAGATGGTTTCATAGCAAAAGATATGACCTTCGAGAACACTGCCGGACCACAAAAGCATCAAGCGGTGGCTCTCCGTTCCGGCGCCGATCATTCCGTTTTCTACCGTTGTTCCTTCAAAGGATATCAGGACACTCTATACGTCTATGCCAACCGTCAATTCTACCGTGACTGTAACATCTACGGAACAGTCGATTTCATCTTCGGCAACGCCGTAACCGTTCTTCAAAACTGCAACATCTTAATTAGAAAACCGATGAGCAACCAACAGAACTCCGTAACGGCACAGGGAAGAACAGATCCAAATGAGAACACCGGAATAGTGATCCATAACTGCCGTATAACCGCCGCGGGTGATTTGAAACCGTATCAGAATTCAGTGAAAAGTTATCTTGGTAGACCGTGGCAGAAGTATTCAAGAACTGTAGTCATGAAAAGTAACATAGATGGTGTTATAAATCCACAAGGTTGGGCTCCATGGAGTGGTGGTTTTGCTTTGAGTACACTTTACTATGGTGAATATATGAATGTTGGTGAGGGTGCTAATACAAATGGGAGAGTGAATTGGCCTGGTTTTCATGTTATAACAAATCCTTCAGAAGCAGTTAAATTTTCAGTTGGTAACTTTTTGGCTGGTGAATCTTGGATTTCTGGTGTGCCGTTTGATGCAGGTTTATGA 1578 0.3904 MQTPFSNHMDRLLFNCLFAYFLFFSFLFVHGKELSCNQTPYPQVCNHYIGTTNTLSTLHSSSFHDIAIEVTMNQAIEAYKLVSTMDLNNFKDNRAKSAWQDCVELYADTIYQLNRSINSNNLDDKLTWQSASITNHQTCQNGFIDFNLPSHLNYFPSILTNFTKLLSNSLSISNTLASSSLSNTKQNGGRRLLSDKFPHWLSGSDRKLLQSTPSADIVVAQDGSGNYKTISEGVAAAKGSGKGRVVIHVKAGVYKENIDIKKTVKNIMIFGDGMDSTIVTGNHNAQDGSTTFRSATFAVMGDGFIAKDMTFENTAGPQKHQAVALRSGADHSVFYRCSFKGYQDTLYVYANRQFYRDCNIYGTVDFIFGNAVTVLQNCNILIRKPMSNQQNSVTAQGRTDPNENTGIVIHNCRITAAGDLKPYQNSVKSYLGRPWQKYSRTVVMKSNIDGVINPQGWAPWSGGFALSTLYYGEYMNVGEGANTNGRVNWPGFHVITNPSEAVKFSVGNFLAGESWISGVPFDAGL 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06671 525 ProSitePatterns Pectinesterase signature 1. 241 260 IPR018040 -
Vivi5g06671 525 CDD PMEI-like_3 34 178 - -
Vivi5g06671 525 SMART PMEI_2 29 172 IPR006501 GO:0004857
Vivi5g06671 525 SUPERFAMILY Pectin lyase-like 211 519 IPR011050 -
Vivi5g06671 525 FunFam Pectinesterase 33 176 - -
Vivi5g06671 525 ProSitePatterns Pectinesterase signature 2. 360 369 IPR033131 -
Vivi5g06671 525 Pfam Plant invertase/pectin methylesterase inhibitor 35 172 IPR006501 GO:0004857
Vivi5g06671 525 SMART complete 249 430 IPR006633 -
Vivi5g06671 525 Gene3D - 210 525 IPR012334 -
Vivi5g06671 525 FunFam Pectinesterase 210 525 - -
Vivi5g06671 525 NCBIfam pectinesterase inhibitor domain 34 176 IPR006501 GO:0004857
Vivi5g06671 525 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 176 IPR035513 -
Vivi5g06671 525 PANTHER PECTINESTERASE 28 517 - -
Vivi5g06671 525 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 178 IPR035513 -
Vivi5g06671 525 Pfam Pectinesterase 216 512 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06671 Vivi-Chr5 173939508 173941687 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06671 35 525 Carbohydrate Esterase AT1G23200 53.030 0.0 529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06671 - - gmx:100775898 788.489