Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06670 ATGCAAACTCCATTTTCTAATCATATGGATAGACTCTTATTCAATTGTTTCATTGCATACTTCTTGTTTTTTTCTTTCTTGTTTGTGCATGCCAAAGATTTATCATGCAACCAAACACCATTCCCTCATGTGTGTGACCATTACATTGGAACCACTAATACACTATCAACCCTACATTCTTCTTCCTTCCATGATATTGCCATTAAGGTTACCATGGACCAAGCTATTGAAGCATACAAACTTGTCTCAATCATGGATATGAATAATTTCAAAGACAGTAGAGCCAAGTCAGCATGGGAAGATTGTGTAGAGCTTTATGAGGATACAATTTATCAACTTAATCGCTCCATAAACTCAAACAATTTAAATGACAAATTAACTTGGCAAAGTGCTTCCATTACCAATCATCAAACTTGTCAAAATGGTTTCATTGATTTCAACCTTCCTTCTCACTTAAACTACTTCCCTTCCATGTTGACAAACTTTACTAAACTTCTTAGCAATTCCCTGTCCATTAGCAACACTCTAGCTTCTTCGACCCCGTCTTCATTATCTTCCTCCTCGTTGTCAAATACTAAACAAAATGGAGGAAGAAGGTTGTTATCAGATAAATTTCCCCATTGGCTTTCAGGTTCAGATAGAAAGCTTCTGCAGACAACACCAAGTGCTGATATTGTGGTGGCACAAGATGGAAGTGGAAACTATAAGACAATATCAGAGGGTATAGCTGCTGCTAAGGGAAGTGGAAAAGGAAGAGTTGTTATTCATGTGAAAGCAGGTGTATATAAAGAGAATATTGATATCAAGAAAACAGTGAAGAACATAATGATATTTGGAGATGGAATGGATTCCACAATTGTTACCGGTAATCATAATGTTCAAGATGGCTCTACAACTTTCCGTTCAGCTACTTTTGCGGTTATGGGAGATGGTTTCATAGCAAAAGATATGACCTTCGAGAATACTGCCGGACCACAGAAGCACCAAGCGGTGGCTCTCCGTTCCGGCGCCGATTACTCCGTTTTCTACCGTTGTTCCTTCAAAGGATATCAGGACACTCTCTACGTCTACGCCAACCGTCAATTCTACCGTGATTGTAACATCTACGGAACTGTCGATTTCATCTTCGGCAACGCCGTTACCGTTCTTCAAAACTGCAACATCTTAGTTAGAAAACCGATGAGCAACCAACAGAACTCGGTAACTGCACAAGGAAGAACAGATCCAAACGAGAACACGGGAATAGTGATCCATAACTGCCGTATAACCGCCGCAGGTGATTTGAAACCATATCAGAATTCAGTGAAAAGTTATCTTGGTAGACCATGGCAGAAGTATTCAAGAACTGTAGTGATGAAAAGTAACATAGATGGTGTTATAAACTCACAAGGATGGGCTCCATGGAGTGGTGGTTTTGCTCTGAGCACACTTTATTATGGTGAATATATGAATATCGGCGATAGTGCTAATACAGATGGGAGAGTGGATTGGTCTGGTTTTCATGTAATTACAAATCCATCTGAAGCAGTTAAATTCTCAGTTGGTAACTTCTTGGCAGGTGAGTCATGGATATCTGGAAGTGGTGTGCCGTTTGATGCAGGCTTGTGA 1608 0.3986 MQTPFSNHMDRLLFNCFIAYFLFFSFLFVHAKDLSCNQTPFPHVCDHYIGTTNTLSTLHSSSFHDIAIKVTMDQAIEAYKLVSIMDMNNFKDSRAKSAWEDCVELYEDTIYQLNRSINSNNLNDKLTWQSASITNHQTCQNGFIDFNLPSHLNYFPSMLTNFTKLLSNSLSISNTLASSTPSSLSSSSLSNTKQNGGRRLLSDKFPHWLSGSDRKLLQTTPSADIVVAQDGSGNYKTISEGIAAAKGSGKGRVVIHVKAGVYKENIDIKKTVKNIMIFGDGMDSTIVTGNHNVQDGSTTFRSATFAVMGDGFIAKDMTFENTAGPQKHQAVALRSGADYSVFYRCSFKGYQDTLYVYANRQFYRDCNIYGTVDFIFGNAVTVLQNCNILVRKPMSNQQNSVTAQGRTDPNENTGIVIHNCRITAAGDLKPYQNSVKSYLGRPWQKYSRTVVMKSNIDGVINSQGWAPWSGGFALSTLYYGEYMNIGDSANTDGRVDWSGFHVITNPSEAVKFSVGNFLAGESWISGSGVPFDAGL 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06670 535 SUPERFAMILY Pectin lyase-like 219 534 IPR011050 -
Vivi5g06670 535 FunFam Pectinesterase 218 535 - -
Vivi5g06670 535 SMART PMEI_2 29 172 IPR006501 GO:0004857
Vivi5g06670 535 PANTHER PECTINESTERASE 24 525 - -
Vivi5g06670 535 CDD PMEI-like_3 34 174 - -
Vivi5g06670 535 MobiDBLite consensus disorder prediction 179 199 - -
Vivi5g06670 535 Pfam Pectinesterase 224 520 IPR000070 GO:0030599|GO:0042545
Vivi5g06670 535 SMART complete 257 438 IPR006633 -
Vivi5g06670 535 Gene3D - 218 535 IPR012334 -
Vivi5g06670 535 ProSitePatterns Pectinesterase signature 2. 368 377 IPR033131 -
Vivi5g06670 535 FunFam Pectinesterase 33 176 - -
Vivi5g06670 535 ProSitePatterns Pectinesterase signature 1. 249 268 IPR018040 -
Vivi5g06670 535 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 179 IPR035513 -
Vivi5g06670 535 Pfam Plant invertase/pectin methylesterase inhibitor 35 172 IPR006501 GO:0004857
Vivi5g06670 535 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 176 IPR035513 -
Vivi5g06670 535 MobiDBLite consensus disorder prediction 179 198 - -
Vivi5g06670 535 NCBIfam pectinesterase inhibitor domain 35 176 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06670 Vivi-Chr5 173902110 173904432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06670 12 535 Carbohydrate Esterase AT1G23200 51.993 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06670 - - gmx:100775898 793.112