Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06650 ATGGACGACGTAAAAGACAAAATGAAAGGCTTCATGAAGAAAGTCAATAACCCTTTCTCTTCTTCATCCTCTGGCAAATTCAAAGGCCAAGGTAGAGTCCTAGGCTCTTCATCAACTACAACGCCAAATTCCATTTCTACCCCTCGCCCTTCTCCTCACAATTCCAATCCCATTTCTAACCCTAAACCCAAACCCAAACCCGAACCTACTCCACCGATTGTTTCAGCTTCGGATGATAGCAGAATCGAAAAAGCTCGTAAACCTGGAGATGGATTTGATCCGTTTGATTCTTTGGTTACTTCATCTCAGAGATCTCGAAATGGTTATTCGGTAAATGTATATGAATGTCCGATTTGCAAAACACCGTTTAGATCGGAAGATGAGGTTTCTGAGCATGTTGAAAGTTGTTTGAGTAATAGAGTTGAAAATATTGATGATGGAAAATTGGTGGAGACTGAGACTGAAGGTGTTGTTGAGACTAATACTGAATTGGAGATTTGTGTTGGGAGTTATGTTTCGGGGAATCCGAGTGAAGGATCGGTTGATATTGTTTTGAAGTTGTTGAGGAATATTGTTAGGGAGCCGGAGAATGTTAAGTTTAGGAAGATTAGGTTGAGTAATCCCAAGATTAAGGAAGCTGTTGCTGAGGTTAATGGCGGGGTTGAGTTGTTGGGGTTTTTGGGGTTTGAGCTCAAGGAGGAGAATGGAGAGACGTGGGCGGTGATGGAGGTTCCGAACGAGGAGAAGATAGGGGTGATTAAGAAAGCAGTTGTGTTGTTGGAACCACAATTGGTAAAGGATCCTCTAAAGAAAGAGAGTCTGGTCTCTGTAGCTTCGGTTGAGAAAGTAGCCGATGCCGAACCGAAGAAGATCGACAGACAGGTTAAGGTCTTCTTTGCTGTTTCCGAAAGCGTTGCTGCTAAAATTGAGCTACCAGATTCCTTCTACAAACGATCAGTTGATGAGGTGAGAAGAGATGCTGAATTGAGGAGAAAAAAGTTTGAAGAGTCTCAGCTTTTAATCCCCAAGTCCCTTAAAGAAAAACAAGCTAAAGCTGCGAAGAGGCGATACACAAGAACTATTATTAGGATTCAGTTCCCAGATGGAATTGTACTTCAAGGTGTATTTGCTCCATGGGAACCAACTACTGCTTTGTATGAGTTTGTCAGCTCTGCATTAAAAGAACAAGGTTTGGAATTCGAGCTAATGCATCCAGTAGTTGTTCAACGGCGAGTTATCCCATGTTTTCCAAAAGCAGGACAAAAAGCCAAAACAATAGAGGAAGAAGACTTGGTGCCTTCTGCTCTAATTAAGTTCAAGCCCCTAGAAACAGATTCTGTTGTTTTCACTAGTCTCAAAAATGAATTGCTTGAAATCAGTGAACCACTTGTAAATGGTTAA 1401 0.4168 MDDVKDKMKGFMKKVNNPFSSSSSGKFKGQGRVLGSSSTTTPNSISTPRPSPHNSNPISNPKPKPKPEPTPPIVSASDDSRIEKARKPGDGFDPFDSLVTSSQRSRNGYSVNVYECPICKTPFRSEDEVSEHVESCLSNRVENIDDGKLVETETEGVVETNTELEICVGSYVSGNPSEGSVDIVLKLLRNIVREPENVKFRKIRLSNPKIKEAVAEVNGGVELLGFLGFELKEENGETWAVMEVPNEEKIGVIKKAVVLLEPQLVKDPLKKESLVSVASVEKVADAEPKKIDRQVKVFFAVSESVAAKIELPDSFYKRSVDEVRRDAELRRKKFEESQLLIPKSLKEKQAKAAKRRYTRTIIRIQFPDGIVLQGVFAPWEPTTALYEFVSSALKEQGLEFELMHPVVVQRRVIPCFPKAGQKAKTIEEEDLVPSALIKFKPLETDSVVFTSLKNELLEISEPLVNG 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06650 466 ProSiteProfiles UBX domain profile. 355 439 IPR001012 GO:0005515
Vivi5g06650 466 Pfam PUB domain 178 253 IPR018997 -
Vivi5g06650 466 SUPERFAMILY PUG domain-like 175 258 IPR036339 -
Vivi5g06650 466 Gene3D - 174 260 - -
Vivi5g06650 466 MobiDBLite consensus disorder prediction 54 72 - -
Vivi5g06650 466 CDD PUB 177 261 - -
Vivi5g06650 466 SUPERFAMILY Ubiquitin-like 327 439 IPR029071 -
Vivi5g06650 466 Gene3D - 349 442 - -
Vivi5g06650 466 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 465 - -
Vivi5g06650 466 SMART PGNneu 179 246 - -
Vivi5g06650 466 MobiDBLite consensus disorder prediction 15 53 - -
Vivi5g06650 466 FunFam UBX domain-containing protein 6 349 440 - -
Vivi5g06650 466 Pfam UBX domain 357 406 IPR001012 GO:0005515
Vivi5g06650 466 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06650 Vivi-Chr5 173694278 173698122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06650 1 387 C2H2 Transcription Factor Family AT2G01650 55.500 1.52e-143 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi5g06650 UBX 4.3e-05 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06650 K14011 - gmx:100779271 599.742