Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06649 ATGGGGAAAAATGACTTTCTCACACCTAAGGCAATTGCCAATCGAATTAAAGCAAAAGGACTGCAGAAGCTTCGGTGGTATTGCCAGATGTGTCAGAAGCAATGTCGTGATGAGAATGGTTTCAAATGCCACTGCATGAGTGAAGGGCACCAGCGTCAAATGCAAATTTTTGGACAAAACCCAACCCGCATAATTGAGGGCTATACCGAAGAGTTTGAAACAACTTTTCTTGAGCACATGAAGCGCAGCCATCGATTCAGCCGTGTGGCTGCCACCGTGGTTTATAATGAATACATAAATGATAGAAATCATGTTCATATGAACTCCACGGAGTGGGCTACACTTACTGAGTTTGTTAAGTACTTGGGTCGAACTGGAAAGTGTAAGGTTGAGGAAACACCGAAGGGATGGTTCATTACATATATAGATAGAGATTCAGAAACTCTTTTCAAAGAGAAGATGAAGAACAAGAGAATCAAGGCAGATTTGGTAGATGAAGAAAAGCAAGAGAAAGAAATCCAAAAACAGATTGAAAGGGCCGAGCAATTGTTGCAGCTGTCTAATCCGGAGTCCGACCAGCCTTCTCAGGTAGAGACTACAAGGGAACTAAATGCAGAGGACGGAATTAAGATAGGATTTTCTCTTGGATCGTCTGCGAAACCTCTGACCAAGGAAAAAGGTGAGGCATCAATAATGGCGTTTGATGAGGTTGATACAGAGAAATATGAGGAAAGGAATCCTGTAAACAACTTGAAGAGAAAAGAAAGTGGTGGTGGAAAATCAACTTTGGATGAAATGATCAGGGAGGAAGAGAGGAAAAAGGAAAAAATCAACAGGAGGGATTATTGGTTGCATGAGGGAATTGTTGTTAAGGTTATGAGCAAAGTCTTGGCAGAAAAGGGGTACTACAAGCAAAAAGGTGTTGTGAGAAAAGTGATTGACAAGTATGTAGGGGAAGTAGAAATGCTAGAAAGCAAGCATGTGCTCAGAGTTGATCAGGAAGAGCTTGAAACGGTGATACCTCAGGTCGGGGGACGTGTAAAAATAGTAAATGGGGCTTATCGTGGATCACTTGCTAGACTGCTCGGGGTGGATACAGATCATTTTTGCGCCAAGGTGCAGATAGAGAAAGGTGCTTATGATGGTAGAGTGCTTAAAGCCGTGGAATATGAGGACATTTGTAAATTAGCCTAG 1194 0.4229 MGKNDFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQIFGQNPTRIIEGYTEEFETTFLEHMKRSHRFSRVAATVVYNEYINDRNHVHMNSTEWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRIKADLVDEEKQEKEIQKQIERAEQLLQLSNPESDQPSQVETTRELNAEDGIKIGFSLGSSAKPLTKEKGEASIMAFDEVDTEKYEERNPVNNLKRKESGGGKSTLDEMIREEERKKEKINRRDYWLHEGIVVKVMSKVLAEKGYYKQKGVVRKVIDKYVGEVEMLESKHVLRVDQEELETVIPQVGGRVKIVNGAYRGSLARLLGVDTDHFCAKVQIEKGAYDGRVLKAVEYEDICKLA 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06649 397 CDD KOW_KIN17 343 396 IPR041995 -
Vivi5g06649 397 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 397 IPR037321 -
Vivi5g06649 397 Pfam KN17 SH3-like C-terminal domain 279 332 IPR041330 -
Vivi5g06649 397 Gene3D - 287 340 - -
Vivi5g06649 397 FunFam DNA/RNA-binding protein kin17-like 287 340 - -
Vivi5g06649 397 SUPERFAMILY beta-beta-alpha zinc fingers 26 66 IPR036236 -
Vivi5g06649 397 Coils Coil 156 186 - -
Vivi5g06649 397 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
Vivi5g06649 397 Coils Coil 260 280 - -
Vivi5g06649 397 Gene3D - 60 160 IPR038254 -
Vivi5g06649 397 SMART Kin17_mid_2 52 178 IPR019447 -
Vivi5g06649 397 Gene3D - 341 397 IPR014722 -
Vivi5g06649 397 FunFam DNA/RNA-binding protein KIN17, putative 341 397 - -
Vivi5g06649 397 FunFam DNA/RNA-binding protein KIN17, putative 61 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06649 Vivi-Chr5 173684110 173686875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06649 1 397 C2H2 Transcription Factor Family AT1G55460 69.952 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06649 K13102 - gmx:100784271 698.353