Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06635 ATGTTCCTGCATTTGACAGATGAACTATGGGCAATGAAACTGGGTTTGAAGCTTCTTCATGAAAGGGCAAAACTTGGATCTTTTTGGTGGCCATACATCAGTAATCTCCCAGAAACATTCTCTCTTCCTATCTTTTTTCCTGGGGAAGACATCAAGAATTTGCAGTATGCTCCTGTTCTTCACCAGGTCAACAAAAGATGCCGATTTCTTCTTGATTTTGAGCAACAAGTCAAGCGTGCGTTAGTTGGTGTTAAACCAGATAAGCATCCTTTTGATGGTCAAGAAGTGGATGCTTCATCTCTGGGGTGGGCGATGTCAGCAGTTTCATCTAGAGCATTCAAGTTACATGGTAACAAAAATTCAAATGGGATAAACTTTGATATACCAATGATGCTTCCTCTAATTGACATGTGTAATCATAGTTTCAATCCAAATGCTAGAATTGTTCAGGAACAAGAAAGTGGTAGCACTAACATGCGGGTGAAGGTTGTGGCTGAGAAAGTAATCAAGGAAGATGATCCTTTATTACTCTGCTATGGATGTTTAAACAACGATCTTTTCCTTCTTGATTACGGATTCGTGATACAATCAAACCCTTATGACTGTATCGAGCTCAGATATGACGGTGCTCTTTTGGAGGCTGCAAGCATGGCAGCTGGAGTTTCTTCACCAAACTTCTCGACACCTGCTCCATGGCAGGAACTTATTTTATCACAGCTAAATCTTGCTGGAGAAGCTCCTGATCTCAAGGTGAGCATAGGTGGTCAAGAAATAATCGAAGGCCGTTTATTGGCTGCACTGAGAGTACTCCTCGCAACTGATAAAGAAACTGTACGGAAGTATGACCTCAACACACTCAAGTCTTTAGATGCTGAGGCTCCTCTGGGTGTTGCAAATGAAATTGCTGTATTTCGTACCTTGATCGCGCTCTGTGTCGTTGCACTGGGACACTTTCCCACCAAATTAATGGATGATGAATCTTTATTGAAGCAGGGTGCTTCAGGTTCAACAGAGTTAGCCATTCAGTTCAGAATCCAGAAGAAATCTATAATTATAGATGTTATGAAAAATCTTGCTAGGAAGGTAAAGGTTCTTTCATCAAATGAGAAAGTTACTGCTGAAGGCTAA 1128 0.4113 MFLHLTDELWAMKLGLKLLHERAKLGSFWWPYISNLPETFSLPIFFPGEDIKNLQYAPVLHQVNKRCRFLLDFEQQVKRALVGVKPDKHPFDGQEVDASSLGWAMSAVSSRAFKLHGNKNSNGINFDIPMMLPLIDMCNHSFNPNARIVQEQESGSTNMRVKVVAEKVIKEDDPLLLCYGCLNNDLFLLDYGFVIQSNPYDCIELRYDGALLEAASMAAGVSSPNFSTPAPWQELILSQLNLAGEAPDLKVSIGGQEIIEGRLLAALRVLLATDKETVRKYDLNTLKSLDAEAPLGVANEIAVFRTLIALCVVALGHFPTKLMDDESLLKQGASGSTELAIQFRIQKKSIIIDVMKNLARKVKVLSSNEKVTAEG 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06635 375 Pfam SET domain 25 180 IPR001214 GO:0005515
Vivi5g06635 375 Pfam Rubisco LSMT substrate-binding 230 351 IPR015353 -
Vivi5g06635 375 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 12 337 - -
Vivi5g06635 375 FunFam SET domain containing protein 216 369 - -
Vivi5g06635 375 Gene3D set domain protein methyltransferase, domain 1 3 193 - -
Vivi5g06635 375 FunFam Histone-lysine N-methyltransferase setd3 2 193 - -
Vivi5g06635 375 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 190 369 IPR036464 -
Vivi5g06635 375 CDD SET_LSMT 10 194 - -
Vivi5g06635 375 Gene3D - 230 372 IPR036464 -
Vivi5g06635 375 SUPERFAMILY SET domain 4 198 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06635 Vivi-Chr5 173517178 173519187 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi5g06635 SET 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06635 - - gmx:100813630 624.009