Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g06628 ATGTCATCACCTAACTACGCTCAGTCCCACGCGCCACTCCTTCGCCCACGTCGCGTGTCTCGCACGCCCGTCCTCGCTCTCCTTCTCGGCCGCCGCGGACCTTCCGTTCTTGTCCGTGAAACCGCCGCGCGCGAGCTCGAAGAGAGGCGCGCCGACTGGGGATACTCGAAGCCGGTGGTGGTGCTCGATGTGACGTGGAACGCGGCCTTCGTGGTGGTCGCGGCGGTTATGTTAGGTTGTAGTGTGGAGGAGAATCCTAACACGCCGATTCGGTTGTGGATCTGCGGGTACGCGTTGCAGTGTTTGGTTCATGTGGCGTTGGTGTGGTTGGAATACAGGAGGAGGAACGGAGGTGGAGGAGGAAGGGACGAGGAATCTCTTGATGGAGATGTCAATGATAGTGAGGATGATGATGATGTTGAATTTCGGAATTCTTCTCGTTCCGGATTTGCAAAACGATGTGCATCATTGAATACCATGCTTTCATTGATTTGGTGGATGGTGGGCTTTTACTGGGTTGTCTATGGTGGTGATATTCTAATGCAAGATGCTCCACGGTTGTACTGGTTGGCTGTTGTCTTTCTAGCATTTGATGTCTTCTTTGCCGTCTTTTGTGTTGCTTTGGCATGCTTAATTGGCATTGCCCTCTGCTGCTGTTTACCCTGTATTATTGGTATTCTCTATGCAGTTGCTGGACAGGAGGGTGCATCTGAAACAGATCTTAGTATACTTCCAAAATATAAGTTTCATGCGGCAGGCAATGAGGAAACACCTAGTCCGAGAGGTGGATCAATGGTTCCCATTGAAAATAGCAGTGGTGCAAATGAACGAGTACTTTCACCGGAGGATGCGGAATGCTGCATATGCATCTCTCCTTATGAGGATGAAGCAGAGCTTCACGCACTTCCTTGTAACCACCATTTTCATTCCACATGCATAGTGAAATGGTTAAAGATGAATGCAACTTGTCCTCTTTGCAAGTTCAATATTCTAAAGGGAAATGAACAGGTGTGA 1014 0.4951 MSSPNYAQSHAPLLRPRRVSRTPVLALLLGRRGPSVLVRETAARELEERRADWGYSKPVVVLDVTWNAAFVVVAAVMLGCSVEENPNTPIRLWICGYALQCLVHVALVWLEYRRRNGGGGGRDEESLDGDVNDSEDDDDVEFRNSSRSGFAKRCASLNTMLSLIWWMVGFYWVVYGGDILMQDAPRLYWLAVVFLAFDVFFAVFCVALACLIGIALCCCLPCIIGILYAVAGQEGASETDLSILPKYKFHAAGNEETPSPRGGSMVPIENSSGANERVLSPEDAECCICISPYEDEAELHALPCNHHFHSTCIVKWLKMNATCPLCKFNILKGNEQV 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g06628 337 CDD RING-H2_PA-TM-RING 285 327 - -
Vivi5g06628 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 331 IPR013083 -
Vivi5g06628 337 PANTHER TARGET OF ERK KINASE MPK-1 29 335 - -
Vivi5g06628 337 Pfam Ring finger domain 285 327 IPR001841 -
Vivi5g06628 337 ProSiteProfiles Zinc finger RING-type profile. 286 327 IPR001841 -
Vivi5g06628 337 SUPERFAMILY RING/U-box 276 331 - -
Vivi5g06628 337 FunFam E3 ubiquitin protein ligase RIE1 266 334 - -
Vivi5g06628 337 SMART ring_2 286 326 IPR001841 -
Vivi5g06628 337 MobiDBLite consensus disorder prediction 117 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g06628 Vivi-Chr5 173431217 173436444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g06628 3 336 C3H Transcription Factor Family AT1G68070 67.251 1.34e-167 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g06628 - K13148 gmx:100797651 475.707